One thousand plant transcriptomes and the&#160;phylogenomics of green plants (Q90911773)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31645766%20AND%20SRC:MED&resulttype=core&format=json

17 April 2020

title

One thousand plant transcriptomes and the phylogenomics of green plants (English)

1 reference

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17 April 2020

author name string

One Thousand Plant Transcriptomes Initiative

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31645766%20AND%20SRC:MED&resulttype=core&format=json

17 April 2020

language of work or name

English

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publication date

23 October 2019

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17 April 2020

1 reference

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17 April 2020

volume

574

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31645766%20AND%20SRC:MED&resulttype=core&format=json

17 April 2020

issue

7780

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17 April 2020

page(s)

679-685

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Plant diversity in a changing world: Status, trends, and conservation needs

17 April 2020

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Tangled up in two: a burst of genome duplications at the end of the Cretaceous and the consequences for plant evolution

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The tomato genome sequence provides insights into fleshy fruit evolution

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Multiple polyploidy events in the early radiation of nodulating and nonnodulating legumes

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Ancient whole genome duplications, novelty and diversification: the WGD Radiation Lag-Time Model

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Nested radiations and the pulse of angiosperm diversification: increased diversification rates often follow whole genome duplications

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Impact of whole-genome duplication events on diversification rates in angiosperms

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7 January 2021

Importance of lineage-specific expansion of plant tandem duplicates in the adaptive response to environmental stimuli

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7 January 2021

A P450-centric view of plant evolution

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7 January 2021

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

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7 January 2021

Insights into Land Plant Evolution Garnered from the Marchantia polymorpha Genome.

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7 January 2021

The Stepwise Increase in the Number of Transcription Factor Families in the Precambrian Predated the Diversification of Plants On Land.

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7 January 2021

Comprehensive Genome-Wide Classification Reveals That Many Plant-Specific Transcription Factors Evolved in Streptophyte Algae

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Monophyly of primary photosynthetic eukaryotes: green plants, red algae, and glaucophytes

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Evidence of ancient genome reduction in red algae (Rhodophyta).

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7 January 2021

Evidence-based green algal genomics reveals marine diversity and ancestral characteristics of land plants

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7 January 2021

Three rings for the evolution of plastid shape: a tale of land plant FtsZ.

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7 January 2021

Phylotranscriptomic analysis of the origin and early diversification of land plants

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7 January 2021

Green algae and the origin of land plants

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7 January 2021

Streptophyte algae and the origin of embryophytes

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7 January 2021

Nested in the Chlorellales or Independent Class? Phylogeny and Classification of the Pedinophyceae (Viridiplantae) Revealed by Molecular Phylogenetic Analyses of Complete Nuclear and Plastid-encoded rRNA Operons

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7 January 2021

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7 January 2021

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7 January 2021

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7 January 2021

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7 January 2021

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7 January 2021

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7 January 2021

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7 January 2021

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7 January 2021

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7 January 2021

A genome for gnetophytes and early evolution of seed plants

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7 January 2021

The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla

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7 January 2021

A genome triplication associated with early diversification of the core eudicots

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7 January 2021

Polyploidy and angiosperm diversification

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7 January 2021

Analysis of 41 plant genomes supports a wave of successful genome duplications in association with the Cretaceous-Paleogene boundary

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7 January 2021

A link between LEAFY and B-gene homologues in Welwitschia mirabilis sheds light on ancestral mechanisms prefiguring floral development.

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7 January 2021

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7 January 2021

Evaluating methods for isolating total RNA and predicting the success of sequencing phylogenetically diverse plant transcriptomes

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7 January 2021

Modified CTAB and TRIzol protocols improve RNA extraction from chemically complex Embryophyta

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7 January 2021

Fast Coalescent-Based Computation of Local Branch Support from Quartet Frequencies

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7 January 2021

Statistical binning enables an accurate coalescent-based estimation of the avian tree

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7 January 2021

Weighted Statistical Binning: Enabling Statistically Consistent Genome-Scale Phylogenetic Analyses

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7 January 2021

Plastid phylogenomic analysis of green plants: A billion years of evolutionary history

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7 January 2021

PASTA: Ultra-Large Multiple Sequence Alignment

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7 January 2021

Fragmentary Gene Sequences Negatively Impact Gene Tree and Species Tree Reconstruction

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7 January 2021

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

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7 January 2021

Incorporating gene-specific variation when inferring and evaluating optimal evolutionary tree topologies from multilocus sequence data

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7 January 2021

Evaluating Summary Methods for Multilocus Species Tree Estimation in the Presence of Incomplete Lineage Sorting

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7 January 2021

Testing for Polytomies in Phylogenetic Species Trees Using Quartet Frequencies.

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7 January 2021

DiscoVista: interpretable visualizations of gene tree discordance

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7 January 2021

The prevalence of terraced treescapes in analyses of phylogenetic data sets.

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7 January 2021

To include or not to include: The Impact of Gene Filtering on Species Tree Estimation Methods

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7 January 2021

The performance of coalescent-based species tree estimation methods under models of missing data.

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7 January 2021

Missing data, incomplete taxa, and phylogenetic accuracy

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7 January 2021

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7 January 2021

Phylogenomic inference in extremis: A case study with mycoheterotroph plastomes

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7 January 2021

ExaML version 3: a tool for phylogenomic analyses on supercomputers

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7 January 2021

On lines and planes of closest fit to systems of points in space

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7 January 2021

FastTree 2--approximately maximum-likelihood trees for large alignments

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7 January 2021

GeneWise and Genomewise

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7 January 2021

Phytozome: a comparative platform for green plant genomics

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7 January 2021

PAML 4: phylogenetic analysis by maximum likelihood

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7 January 2021

Widespread genome duplications throughout the history of flowering plants

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7 January 2021

Multiple large-scale gene and genome duplications during the evolution of hexapods.

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7 January 2021

Detecting and locating whole genome duplications on a phylogeny: a probabilistic approach

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7 January 2021

Analysis of phylogenomic datasets reveals conflict, concordance, and gene duplications with examples from animals and plants.

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7 January 2021

MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform

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7 January 2021

MUSCLE: multiple sequence alignment with high accuracy and high throughput

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7 January 2021

GenPhyloData: realistic simulation of gene family evolution

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7 January 2021

Evaluating and Characterizing Ancient Whole-Genome Duplications in Plants with Gene Count Data

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7 January 2021

Genome-wide phylogenetic comparative analysis of plant transcriptional regulation: a timeline of loss, gain, expansion, and correlation with complexity

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7 January 2021

Clustering of highly homologous sequences to reduce the size of large protein databases

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7 January 2021

Tolerating some redundancy significantly speeds up clustering of large protein databases

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7 January 2021

Accelerated Profile HMM Searches

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7 January 2021

Two ancient classes of MIKC-type MADS-box genes are present in the moss Physcomitrella patens

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7 January 2021

10.1038/S41586-019-1693-2

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31645766%20AND%20SRC:MED&resulttype=core&format=json

17 April 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31645766%20AND%20SRC:MED&resulttype=core&format=json

17 April 2020

PubMed publication ID

31645766

1 reference