Horizontally transmitted symbiont populations in deep-sea mussels are genetically isolated (Q92509648)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31395952%20AND%20SRC:MED&resulttype=core&format=json

30 April 2020

title

Horizontally transmitted symbiont populations in deep-sea mussels are genetically isolated (English)

1 reference

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30 April 2020

2

1 reference

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30 April 2020

Nicole Dubilier

series ordinal

5

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30 April 2020

Anne Kupczok

series ordinal

6

1 reference

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30 April 2020

4

Jillian M Petersen

1 reference

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30 April 2020

3

Rebecca Ansorge

1 reference

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30 April 2020

author name string

Devani Romero Picazo

series ordinal

1

1 reference

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30 April 2020

publication date

8 August 2019

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30 April 2020

1 reference

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30 April 2020

volume

13

1 reference

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30 April 2020

issue

12

1 reference

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30 April 2020

page(s)

2954-2968

1 reference

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Genomic diversity landscape of the honey bee gut microbiota

30 April 2020

cites work

1 reference

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11 February 2021

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A gut microbial factor modulates locomotor behaviour in Drosophila

11 February 2021

1 reference

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Multi-scale characterization of symbiont diversity in the pea aphid complex through metagenomic approaches

11 February 2021

1 reference

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Environment dominates over host genetics in shaping human gut microbiota

11 February 2021

1 reference

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Phylogenetic rooting using minimal ancestor deviation

11 February 2021

1 reference

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Role of priority effects in the early-life assembly of the gut microbiota.

11 February 2021

1 reference

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Parallel genome reduction in symbionts descended from closely related free-living bacteria

11 February 2021

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DESMAN: a new tool for de novo extraction of strains from metagenomes.

11 February 2021

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Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes.

11 February 2021

1 reference

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Deciphering the landscape of host barriers to Listeria monocytogenes infection.

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6863903

Geographical structure of endosymbiotic bacteria hosted by Bathymodiolus mussels at eastern Pacific hydrothermal vents.

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6863903

metaSPAdes: a new versatile metagenomic assembler

11 February 2021

1 reference

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Stochastic assembly produces heterogeneous communities in the Caenorhabditis elegans intestine

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6863903

Mixed transmission modes and dynamic genome evolution in an obligate animal-bacterial symbiosis

11 February 2021

1 reference

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Metabolic and physiological interdependencies in the Bathymodiolus azoricus symbiosis

11 February 2021

1 reference

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Specific microbiome-dependent mechanisms underlie the energy harvest efficiency of ruminants

11 February 2021

1 reference

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The effects of sample size on population genomic analyses--implications for the tests of neutrality

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6863903

The Gut Microbiota Modulates Energy Metabolism in the Hibernating Brown Bear Ursus arctos

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6863903

Within-host evolution of bacterial pathogens

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6863903

Heterogeneous composition of key metabolic gene clusters in a vent mussel symbiont population

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6863903

Endosymbionts escape dead hydrothermal vent tubeworms to enrich the free-living population

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6863903

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6863903

Endosymbiont evolution: predictions from theory and surprises from genomes

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6863903

Dissemination of a highly virulent pathogen: tracking the early events that define infection

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6863903

Fast and sensitive protein alignment using DIAMOND

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6863903

IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6863903

Forever competent: deep-sea bivalves are colonized by their chemosynthetic symbionts throughout their lifetime.

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6863903

Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6863903

The importance of microbes in animal development: lessons from the squid-vibrio symbiosis.

11 February 2021

1 reference

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Single-cell genomics reveals hundreds of coexisting subpopulations in wild Prochlorococcus.

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6863903

Ordering microbial diversity into ecologically and genetically cohesive units

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6863903

Evidence for horizontal transmission from multilocus phylogeny of deep-sea mussel (Mytilidae) symbionts.

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6863903

Diet rapidly and reproducibly alters the human gut microbiome

11 February 2021

1 reference

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Adaptive radiation of chemosymbiotic deep-sea mussels

11 February 2021

1 reference

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Animals in a bacterial world, a new imperative for the life sciences

11 February 2021

1 reference

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Shift from widespread symbiont infection of host tissues to specific colonization of gills in juvenile deep-sea mussels

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6863903

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6863903

Genomic variation landscape of the human gut microbiome

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6863903

LoFreq: a sequence-quality aware, ultra-sensitive variant caller for uncovering cell-population heterogeneity from high-throughput sequencing datasets

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6863903

Host remodeling of the gut microbiome and metabolic changes during pregnancy

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6863903

Gene and translation initiation site prediction in metagenomic sequences

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6863903

The application of ecological theory toward an understanding of the human microbiome

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6863903

The Positive Correlation between dN/dS and dS in Mammals Is Due to Runs of Adjacent Substitutions

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6863903

Individuality in gut microbiota composition is a complex polygenic trait shaped by multiple environmental and host genetic factors

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6863903

One bacterial cell, one complete genome

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6863903

Picante: R tools for integrating phylogenies and ecology

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6863903

A complex journey: transmission of microbial symbionts

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6863903

The Sequence Alignment/Map format and SAMtools

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6863903

Fast and accurate short read alignment with Burrows-Wheeler transform

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6863903

The population genetics of dN/dS

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6863903

Population structure of Vibrio fischeri within the light organs of Euprymna scolopes squid from Two Oahu (Hawaii) populations

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6863903

Microbial diversity and the genetic nature of microbial species

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6863903

Diversity, relative abundance and metabolic potential of bacterial endosymbionts in three Bathymodiolus mussel species from cold seeps in the Gulf of Mexico.

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6863903

Phylogenetic measures of biodiversity

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6863903

Comparisons of dN/dS are time dependent for closely related bacterial genomes

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6863903

Loss of Wolbachia infection during colonisation in the invasive Argentine ant Linepithema humile.

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6863903

Environmental Acquisition of Thiotrophic Endosymbionts by Deep-Sea Mussels of the Genus Bathymodiolus

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6863903

BLAT—The BLAST-Like Alignment Tool

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6863903

SplitsTree: analyzing and visualizing evolutionary data

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6863903

Excess amino acid polymorphism in mitochondrial DNA: contrasts among genes from Drosophila, mice, and humans

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6863903

DNA recovery from soils of diverse composition.

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6863903

Temperature-induced bleaching of corals begins with impairment of the CO2 fixation mechanism in zooxanthellae

11 February 2021

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FS41396-019-0475-Z

inferred from DOI database lookup

7 January 2021

based on heuristic

Identifiers

DOI

10.1038/S41396-019-0475-Z

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31395952%20AND%20SRC:MED&resulttype=core&format=json

30 April 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31395952%20AND%20SRC:MED&resulttype=core&format=json

30 April 2020

PubMed publication ID

31395952

1 reference