SPHIRE-crYOLO is a fast and accurate fully automated particle picker for cryo-EM (Q93031254)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31240256%20AND%20SRC:MED&resulttype=core&format=json

3 May 2020

title

SPHIRE-crYOLO is a fast and accurate fully automated particle picker for cryo-EM (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31240256%20AND%20SRC:MED&resulttype=core&format=json

3 May 2020

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31240256%20AND%20SRC:MED&resulttype=core&format=json

3 May 2020

Felipe Merino

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31240256%20AND%20SRC:MED&resulttype=core&format=json

3 May 2020

Tobias Raisch

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31240256%20AND%20SRC:MED&resulttype=core&format=json

3 May 2020

Dennis Quentin

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31240256%20AND%20SRC:MED&resulttype=core&format=json

3 May 2020

Christos Gatsogiannis

18

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31240256%20AND%20SRC:MED&resulttype=core&format=json

3 May 2020

Stefan Raunser

19

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31240256%20AND%20SRC:MED&resulttype=core&format=json

3 May 2020

author name string

Markus Stabrin

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31240256%20AND%20SRC:MED&resulttype=core&format=json

3 May 2020

Toshio Moriya

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31240256%20AND%20SRC:MED&resulttype=core&format=json

3 May 2020

Claudia Antoni

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31240256%20AND%20SRC:MED&resulttype=core&format=json

3 May 2020

Amir Apelbaum

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31240256%20AND%20SRC:MED&resulttype=core&format=json

3 May 2020

Philine Hagel

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31240256%20AND%20SRC:MED&resulttype=core&format=json

3 May 2020

Oleg Sitsel

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31240256%20AND%20SRC:MED&resulttype=core&format=json

3 May 2020

Daniel Prumbaum

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31240256%20AND%20SRC:MED&resulttype=core&format=json

3 May 2020

Daniel Roderer

12

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31240256%20AND%20SRC:MED&resulttype=core&format=json

3 May 2020

Sebastian Tacke

13

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31240256%20AND%20SRC:MED&resulttype=core&format=json

3 May 2020

Birte Siebolds

14

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31240256%20AND%20SRC:MED&resulttype=core&format=json

3 May 2020

Evelyn Schubert

15

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31240256%20AND%20SRC:MED&resulttype=core&format=json

3 May 2020

Tanvir R Shaikh

16

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31240256%20AND%20SRC:MED&resulttype=core&format=json

3 May 2020

Pascal Lill

17

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31240256%20AND%20SRC:MED&resulttype=core&format=json

3 May 2020

publication date

19 June 2019

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31240256%20AND%20SRC:MED&resulttype=core&format=json

3 May 2020

published in

Communications Biology

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31240256%20AND%20SRC:MED&resulttype=core&format=json

3 May 2020

volume

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31240256%20AND%20SRC:MED&resulttype=core&format=json

3 May 2020

page(s)

218

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31240256%20AND%20SRC:MED&resulttype=core&format=json

Electron cryo-microscopy structure of the canonical TRPC4 ion channel.

3 May 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6584505

Positive-unlabeled convolutional neural networks for particle picking in cryo-electron micrographs

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6584505

Molecular mechanism of promoter opening by RNA polymerase III.

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6584505

A deep convolutional neural network approach to single-particle recognition in cryo-electron microscopy

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6584505

Cryo-EM structure of haemoglobin at 3.2 Å determined with the Volta phase plate.

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6584505

Electron cryo-microscopy structure of the mechanotransduction channel NOMPC.

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6584505

Deep Convolutional Neural Networks for Image Classification: A Comprehensive Review.

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6584505

High-resolution Single Particle Analysis from Electron Cryo-microscopy Images Using SPHIRE

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6584505

DeepPicker: A deep learning approach for fully automated particle picking in cryo-EM.

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6584505

Scipion: A software framework toward integration, reproducibility and validation in 3D electron microscopy

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6584505

Volta phase plate cryo-EM of the small protein complex Prx3

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6584505

Semi-automated selection of cryo-EM particles in RELION-1.3.

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6584505

Deep learning in neural networks: an overview

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6584505

Avoiding the pitfalls of single particle cryo-electron microscopy: Einstein from noise

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6584505

A syringe-like injection mechanism in Photorhabdus luminescens toxins.

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6584505

RELION: implementation of a Bayesian approach to cryo-EM structure determination

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6584505

Iterative stable alignment and clustering of 2D transmission electron microscope images

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6584505

DoG Picker and TiltPicker: software tools to facilitate particle selection in single particle electron microscopy

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6584505

Determination of signal-to-noise ratios and spectral SNRs in cryo-EM low-dose imaging of molecules

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6584505

EMAN2: an extensible image processing suite for electron microscopy

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6584505

An approach to automated particle picking from electron micrographs based on reduced representation templates

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6584505

FindEM--a fast, efficient program for automatic selection of particles from electron micrographs

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6584505

Application of template matching technique to particle detection in electron micrographs

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6584505

Automatic particle selection: results of a comparative study

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6584505

An automatic particle pickup method using a neural network applicable to low-contrast electron micrographs.

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6584505

Review: automatic particle detection in electron microscopy

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6584505

YOLO9000: Better, Faster, Stronger

11 February 2021

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FS42003-019-0437-Z

inferred from DOI database lookup

7 January 2021

based on heuristic

ImageNet Large Scale Visual Recognition Challenge

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FS42003-019-0437-Z

inferred from DOI database lookup

7 January 2021

based on heuristic

Gradient-based learning applied to document recognition

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FS42003-019-0437-Z

inferred from DOI database lookup

7 January 2021

based on heuristic

Identifiers

DOI

10.1038/S42003-019-0437-Z

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31240256%20AND%20SRC:MED&resulttype=core&format=json

3 May 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31240256%20AND%20SRC:MED&resulttype=core&format=json

3 May 2020

PubMed publication ID

31240256

1 reference