Ultra-High-Throughput Clinical Proteomics Reveals Classifiers of COVID-19 Infection (Q96781863)

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4 July 2020

30

Martin Witzenrath

1 reference

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4 July 2020

25

Kathryn S Lilley

1 reference

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4 July 2020

author name string

Vadim Demichev

2

1 reference

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4 July 2020

Daniel Wendisch

3

1 reference

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4 July 2020

Laura Michalick

4

1 reference

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4 July 2020

Matthew White

5

1 reference

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4 July 2020

Anja Freiwald

6

1 reference

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4 July 2020

Kathrin Textoris-Taube

7

1 reference

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4 July 2020

Anna-Sophia Egger

9

1 reference

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4 July 2020

Marco Kreidl

10

1 reference

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4 July 2020

Daniela Ludwig

11

1 reference

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4 July 2020

Christiane Kilian

12

1 reference

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4 July 2020

Federica Agostini

13

1 reference

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4 July 2020

Aleksej Zelezniak

14

1 reference

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4 July 2020

Charlotte Thibeault

15

1 reference

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4 July 2020

Moritz Pfeiffer

16

1 reference

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4 July 2020

Stefan Hippenstiel

17

1 reference

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4 July 2020

Andreas Hocke

18

1 reference

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4 July 2020

Christof von Kalle

19

1 reference

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4 July 2020

Archie Campbell

20

1 reference

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4 July 2020

Caroline Hayward

21

1 reference

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4 July 2020

Claudia Langenberg

24

1 reference

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4 July 2020

Michael Mülleder

27

1 reference

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4 July 2020

Norbert Suttorp

29

1 reference

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4 July 2020

Florian Kurth

31

1 reference

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4 July 2020

Leif Erik Sander

32

1 reference

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4 July 2020

Markus Ralser

33

1 reference

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4 July 2020

Christoph B Messner

1

1 reference

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4 July 2020

Spyros I Vernardis

8

1 reference

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4 July 2020

David J Porteous

22

1 reference

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4 July 2020

Riccardo E Marioni

23

1 reference

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4 July 2020

Wolfgang M Kuebler

26

1 reference

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4 July 2020

publication date

June 2020

0 references

published in

Cell Systems

1 reference

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Interleukin-6 in Covid-19: A systematic review and meta-analysis

4 July 2020

cites work

1 reference

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Proteomic and Metabolomic Characterization of COVID-19 Patient Sera

10 February 2021

1 reference

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Correction to: Clinical predictors of mortality due to COVID-19 based on an analysis of data of 150 patients from Wuhan, China

10 February 2021

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Developing antibody tests for SARS-CoV-2

10 February 2021

1 reference

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Clinical course and risk factors for mortality of adult inpatients with COVID-19 in Wuhan, China: a retrospective cohort study

10 February 2021

1 reference

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Automated sample preparation with SP3 for low-input clinical proteomics

10 February 2021

1 reference

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A Compact Quadrupole-Orbitrap Mass Spectrometer with FAIMS Interface Improves Proteome Coverage in Short LC Gradients

10 February 2021

1 reference

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Epidemiological and clinical characteristics of 99 cases of 2019 novel coronavirus pneumonia in Wuhan, China: a descriptive study

10 February 2021

1 reference

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Detection of 2019 novel coronavirus (2019-nCoV) by real-time RT-PCR

10 February 2021

1 reference

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Clinical features of patients infected with 2019 novel coronavirus in Wuhan, China

10 February 2021

1 reference

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Personal aging markers and ageotypes revealed by deep longitudinal profiling

10 February 2021

1 reference

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Robust, reproducible and quantitative analysis of thousands of proteomes by micro-flow LC-MS/MS

10 February 2021

1 reference

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iq: an R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics

10 February 2021

1 reference

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Apolipoprotein C1: Its Pleiotropic Effects in Lipid Metabolism and Beyond

10 February 2021

1 reference

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DIA-NN: neural networks and interference correction enable deep proteome coverage in high throughput

10 February 2021

1 reference

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Innate Immune Evasion by Human Respiratory RNA Viruses

10 February 2021

1 reference

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Mechanical strain promotes skin fibrosis through LRG-1 induction mediated by ELK1 and ERK signalling

10 February 2021

1 reference

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Anti-Inflammatory Effects of HDL (High-Density Lipoprotein) in Macrophages Predominate Over Proinflammatory Effects in Atherosclerotic Plaques

10 February 2021

1 reference

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Plasma Proteome Profiling to detect and avoid sample-related biases in biomarker studies

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7264033

Pre-operative Circulating Plasma Gelsolin Predicts Residual Disease and Detects Early Stage Ovarian Cancer

10 February 2021

1 reference

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Impaired HDL Function Amplifies Systemic Inflammation in Common Variable Immunodeficiency

10 February 2021

1 reference

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Analysis of 1508 Plasma Samples by Capillary-Flow Data-Independent Acquisition Profiles Proteomics of Weight Loss and Maintenance

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7264033

LRG is a novel inflammatory marker clinically useful for the evaluation of disease activity in rheumatoid arthritis and inflammatory bowel disease

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7264033

Plasma proteome profiling discovers novel proteins associated with non-alcoholic fatty liver disease

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7264033

Implementation of Proteomics in Clinical Trials

10 February 2021

1 reference

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Plasma Proteome Profiling Reveals Dynamics of Inflammatory and Lipid Homeostasis Markers after Roux-En-Y Gastric Bypass Surgery

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7264033

The PRIDE database and related tools and resources in 2019: improving support for quantification data

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7264033

UniProt: a worldwide hub of protein knowledge

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7264033

The papain-like protease determines a virulence trait that varies among members of the SARS-coronavirus species

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7264033

Strategies for immune evasion by human tumor viruses

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7264033

Plasma gelsolin promotes re-epithelialization

10 February 2021

1 reference

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Plasma Gelsolin: Indicator of Inflammation and Its Potential as a Diagnostic Tool and Therapeutic Target

10 February 2021

1 reference

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Data-independent acquisition-based SWATH-MS for quantitative proteomics: a tutorial

10 February 2021

1 reference

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A Novel LC System Embeds Analytes in Pre-formed Gradients for Rapid, Ultra-robust Proteomics

10 February 2021

1 reference

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The Role of Galectins as Modulators of Metabolism and Inflammation.

10 February 2021

1 reference

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Activation of TGF-β1/α-SMA/Col I Profibrotic Pathway in Fibroblasts by Galectin-3 Contributes to Atrial Fibrosis in Experimental Models and Patients

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7264033

A Cost-Effective High-Throughput Plasma and Serum Proteomics Workflow Enables Mapping of the Molecular Impact of Total Pancreatectomy with Islet Autotransplantation.

10 February 2021

1 reference

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Cost-effective generation of precise label-free quantitative proteomes in high-throughput by microLC and data-independent acquisition.

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7264033

Leucine-rich α-2 glycoprotein promotes lung fibrosis by modulating TGF-β signaling in fibroblasts

10 February 2021

1 reference

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Highly Reproducible Automated Proteomics Sample Preparation Workflow for Quantitative Mass Spectrometry.

10 February 2021

1 reference

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Revisiting biomarker discovery by plasma proteomics.

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7264033

Decreased serum apolipoprotein A1 levels are associated with poor survival and systemic inflammatory response in colorectal cancer.

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7264033

Generation of High-Quality SWATH® Acquisition Data for Label-free Quantitative Proteomics Studies Using TripleTOF® Mass Spectrometers

10 February 2021

1 reference

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Gelsolin Inhibits the Inflammatory Process Induced by LPS.

10 February 2021

1 reference

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Proteomics reveals the effects of sustained weight loss on the human plasma proteome

10 February 2021

1 reference

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The Pathogenesis of Ebola Virus Disease

10 February 2021

1 reference

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A Roadmap to Successful Clinical Proteomics.

10 February 2021

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LRG1 promotes angiogenesis through upregulating the TGF‑β1 pathway in ischemic rat brain

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7264033

Now, More Than Ever, Proteomics Needs Better Chromatography

10 February 2021

1 reference

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Molecular Basis of Coronavirus Virulence and Vaccine Development

10 February 2021

1 reference

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Innate immune evasion strategies of DNA and RNA viruses

10 February 2021

1 reference

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Complex heatmaps reveal patterns and correlations in multidimensional genomic data.

10 February 2021

1 reference

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Plasma Proteome Profiling to Assess Human Health and Disease

10 February 2021

1 reference

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Dysregulated Type I Interferon and Inflammatory Monocyte-Macrophage Responses Cause Lethal Pneumonia in SARS-CoV-Infected Mice.

10 February 2021

1 reference

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Advances in mass spectrometry-based clinical biomarker discovery

10 February 2021

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HIV replication: a game of hide and sense.

10 February 2021

1 reference

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Gelsolin Is Associated with Longer Metastasis-free Survival and Reduced Cell Migration in Estrogen Receptor-positive Breast Cancer.

10 February 2021

1 reference

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Soluble CD14 is a nonspecific marker of monocyte activation

10 February 2021

1 reference

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Quantitative variability of 342 plasma proteins in a human twin population

10 February 2021

1 reference

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Plasma gelsolin levels decrease in diabetic state and increase upon treatment with F-actin depolymerizing versions of gelsolin

10 February 2021

1 reference

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Accurate proteome-wide label-free quantification by delayed normalization and maximal peptide ratio extraction, termed MaxLFQ.

10 February 2021

1 reference

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Quantitative bottom-up proteomics depends on digestion conditions.

10 February 2021

1 reference

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Role of CD14 in host protection against infections and in metabolism regulation.

10 February 2021

1 reference

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LRG1 promotes angiogenesis by modulating endothelial TGF-β signalling.

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7264033

Nano-liquid chromatography in pharmaceutical and biomedical research

10 February 2021

1 reference

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Sources of technical variability in quantitative LC-MS proteomics: human brain tissue sample analysis

10 February 2021

1 reference

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Human lipopolysaccharide-binding protein (LBP) and CD14 independently deliver triacylated lipoproteins to Toll-like receptor 1 (TLR1) and TLR2 and enhance formation of the ternary signaling complex

10 February 2021

1 reference

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Genetic and pharmacological inhibition of galectin-3 prevents cardiac remodeling by interfering with myocardial fibrogenesis

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7264033

Multifunctional roles of gelsolin in health and diseases

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7264033

Cohort Profile: Generation Scotland: Scottish Family Health Study (GS:SFHS). The study, its participants and their potential for genetic research on health and illness.

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7264033

Activity-dependent neuroprotector homeobox protein: A candidate protein identified in serum as diagnostic biomarker for Alzheimer's disease

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7264033

Implementation of proteomic biomarkers: making it work

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7264033

Decreased plasma concentrations of apolipoprotein M in sepsis and systemic inflammatory response syndromes

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7264033

A galectin-3-dependent pathway upregulates interleukin-6 in the microenvironment of human neuroblastoma

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7264033

Targeted data extraction of the MS/MS spectra generated by data-independent acquisition: a new concept for consistent and accurate proteome analysis

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7264033

Regulation of transforming growth factor-β1-driven lung fibrosis by galectin-3

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7264033

Monitoring protein expression in whole-cell extracts by targeted label- and standard-free LC-MS/MS.

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7264033

LC-MS/MS in the Clinical Laboratory - Where to From Here?

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7264033

Acute-phase proteins: As diagnostic tool

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7264033

High density lipoprotein: it's not just about lipid transport anymore

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7264033

Mass spectrometry in high-throughput proteomics: ready for the big time.

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7264033

Expression, regulation and clinical significance of soluble and membrane CD14 receptors in pediatric inflammatory lung diseases.

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7264033

Role of CD14 in lung inflammation and infection

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7264033

Up-regulation of the expression of leucine-rich alpha(2)-glycoprotein in hepatocytes by the mediators of acute-phase response

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7264033

Plasma gelsolin as a biomarker of inflammation

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7264033

Severe acute respiratory syndrome-associated coronavirus nucleocapsid protein interacts with Smad3 and modulates transforming growth factor-beta signaling

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7264033

Plasma gelsolin is a marker and therapeutic agent in animal sepsis.

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7264033

Porcine reproductive and respiratory syndrome virus infection increases CD14 expression and lipopolysaccharide-binding protein in the lungs of pigs

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7264033

CD14 is an acute-phase protein

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7264033

The human plasma proteome: history, character, and diagnostic prospects

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7264033

Inter-alpha-trypsin inhibitor proteoglycan family--a group of proteins binding and stabilizing the extracellular matrix

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7264033

CD14 and other recognition molecules for lipopolysaccharide: a review

10 February 2021

1 reference