Genome and transcriptome sequencing identifies breeding targets in the orphan crop tef (Eragrostis tef) (Q21266645)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25007843%20AND%20SRC:MED&resulttype=core&format=json

9 March 2020

title

Genome and transcriptome sequencing identifies breeding targets in the orphan crop tef (Eragrostis tef) (English)

1 reference

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9 March 2020

0 references

0 references

1

Gina Cannarozzi

Gina

Cannarozzi

1 reference

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9 March 2020

7

Edouard de Castro

Edouard

de Castro

1 reference

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9 March 2020

12

Michel Schneider

Michel

Schneider

1 reference

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9 March 2020

13

Laurent Falquet

Laurent

Falquet

1 reference

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9 March 2020

16

Zerihun Tadele

Zerihun

Tadele

1 reference

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9 March 2020

11

Eric Lyons

Eric

Lyons

1 reference

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9 March 2020

14

Cris Kuhlemeier

Cris

Kuhlemeier

1 reference

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9 March 2020

15

Kebebew

Assefa

Kebebew Assefa

1 reference

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9 March 2020

Sonia Plaza-Wüthrich

2

Sonia

Plaza-Wüthrich

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25007843%20AND%20SRC:MED&resulttype=core&format=json

9 March 2020

Korinna Esfeld

3

Korinna

Esfeld

1 reference

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9 March 2020

Stéphanie Larti

4

Stéphanie

Larti

1 reference

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9 March 2020

Yi Song Wilson

5

Yi Song

Wilson

1 reference

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9 March 2020

Dejene Girma

6

Dejene

Girma

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25007843%20AND%20SRC:MED&resulttype=core&format=json

9 March 2020

Solomon Chanyalew

8

Solomon

Chanyalew

1 reference

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9 March 2020

Regula Blösch

9

Regula

Blösch

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25007843%20AND%20SRC:MED&resulttype=core&format=json

9 March 2020

Laurent Farinelli

10

Laurent

Farinelli

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25007843%20AND%20SRC:MED&resulttype=core&format=json

9 March 2020

language of work or name

English

0 references

publication date

9 July 2014

1 reference

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9 March 2020

1 reference

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9 March 2020

volume

15

1 reference

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9 March 2020

issue

1

0 references

page(s)

581

1 reference

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describes a project that uses

9 March 2020

MUMmer

object named as

MUMmer

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

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19 March 2017

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19 March 2017

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19 March 2017

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19 March 2017

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19 March 2017

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19 March 2017

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Genome sequence and analysis of the tuber crop potato

19 March 2017

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De novo genome sequencing and comparative genomics of date palm (Phoenix dactylifera)

19 March 2017

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The genome of Theobroma cacao

19 March 2017

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The B73 Maize Genome: Complexity, Diversity, and Dynamics

19 March 2017

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The genome of the cucumber, Cucumis sativus L

19 March 2017

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The Sorghum bicolor genome and the diversification of grasses

19 March 2017

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19 March 2017

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19 March 2017

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19 March 2017

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OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes

19 March 2017

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19 March 2017

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Haplotype Analysis and Linkage Disequilibrium at Five Loci in Eragrostis tef

19 March 2017

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MITE-Hunter: a program for discovering miniature inverted-repeat transposable elements from genomic sequences

19 March 2017

1 reference

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Substitution rate comparisons between grasses and palms: synonymous rate differences at the nuclear gene Adh parallel rate differences at the plastid gene rbcL

19 March 2017

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Search and clustering orders of magnitude faster than BLAST

19 March 2017

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7 April 2017

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7 April 2017

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7 April 2017

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7 April 2017

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7 April 2017

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7 April 2017

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7 April 2017

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The evolutionary significance of ancient genome duplications

7 April 2017

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MAKER: an easy-to-use annotation pipeline designed for emerging model organism genomes

7 April 2017

1 reference

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Ancient polyploidization predating divergence of the cereals, and its consequences for comparative genomics

7 April 2017

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TIGR Gene Indices clustering tools (TGICL): a software system for fast clustering of large EST datasets

7 April 2017

1 reference

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ESTScan: a program for detecting, evaluating, and reconstructing potential coding regions in EST sequences

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4119204

Combining transcriptome assemblies from multiple de novo assemblers in the allo-tetraploid plant Nicotiana benthamiana

7 April 2017

1 reference

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Improvement of the Oryza sativa Nipponbare reference genome using next generation sequence and optical map data

12 September 2017

1 reference

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Virus-induced gene silencing of Arabidopsis thaliana gene homologues in wheat identifies genes conferring improved drought tolerance

12 September 2017

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12 September 2017

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HAMAP in 2013, new developments in the protein family classification and annotation system

12 September 2017

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12 September 2017

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Transcriptome-scale homoeolog-specific transcript assemblies of bread wheat.

12 September 2017

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Reference genome sequence of the model plant Setaria

12 September 2017

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12 September 2017

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12 September 2017

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The origin and evolution of Eragrostis tef (Poaceae) and related polyploids: evidence from nuclear waxy and plastid rps16.

12 September 2017

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A fast, lock-free approach for efficient parallel counting of occurrences of k-mers

12 September 2017

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QTL mapping for yield and lodging resistance in an enhanced SSR-based map for tef.

12 September 2017

1 reference

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Detection and correction of false segmental duplications caused by genome mis-assembly

12 September 2017

1 reference

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Amplification of prolamin storage protein genes in different subfamilies of the Poaceae.

12 September 2017

1 reference

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The role of hybridization in plant speciation

12 September 2017

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Genomic plasticity and the diversity of polyploid plants

12 September 2017

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Genome assembly forensics: finding the elusive mis-assembly

12 September 2017

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How to usefully compare homologous plant genes and chromosomes as DNA sequences

12 September 2017

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AUGUSTUS: ab initio prediction of alternative transcripts

12 September 2017

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Expressed sequence tag analysis in tef (Eragrostis tef (Zucc) Trotter).

12 September 2017

1 reference

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The chloroplast genome of Nicotiana sylvestris and Nicotiana tomentosiformis: complete sequencing confirms that the Nicotiana sylvestris progenitor is the maternal genome donor of Nicotiana tabacum

12 September 2017

1 reference

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WindowMasker: window-based masker for sequenced genomes

12 September 2017

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Darwin v. 2.0: an interpreted computer language for the biosciences

12 September 2017

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'Green revolution' genes encode mutant gibberellin response modulators.

12 September 2017

1 reference

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The nucleotidase/phosphatase SAL1 is a negative regulator of drought tolerance in Arabidopsis

12 September 2017

1 reference

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Enhancements and modifications of primer design program Primer3.

27 September 2017

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Close split of sorghum and maize genome progenitors

27 September 2017

1 reference

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Estimating the repeat structure and length of DNA sequences using L-tuples

27 September 2017

1 reference

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The draft genome of a diploid cotton Gossypium raimondii

27 September 2017

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GtRNAdb: a database of transfer RNA genes detected in genomic sequence

30 May 2018

1 reference

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Tef in the diet of celiac patients in The Netherlands

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4119204

A nuclear gene, erd1, encoding a chloroplast-targeted Clp protease regulatory subunit homolog is not only induced by water stress but also developmentally up-regulated during senescence in Arabidopsis thaliana.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4119204

The draft genome of watermelon (Citrullus lanatus) and resequencing of 20 diverse accessions

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4119204

Genome sequence of foxtail millet (Setaria italica) provides insights into grass evolution and biofuel potential

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4119204

Comprehensive, quantitative mapping of T cell epitopes in gluten in celiac disease.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4119204

Foxtail millet: a sequence-driven grass model system

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4119204

Finding and comparing syntenic regions among Arabidopsis and the outgroups papaya, poplar, and grape: CoGe with rosids

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4119204

A genome-wide view of miniature inverted-repeat transposable elements (MITEs) in rice, Oryza sativa ssp. japonica

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4119204

Using MUMmer to identify similar regions in large sequence sets.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4119204

Molecular cloning and function analysis of the stay green gene in rice

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4119204

Gepard: a rapid and sensitive tool for creating dotplots on genome scale.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4119204

Beware of mis-assembled genomes.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4119204

The Ethiopian cereal tef in celiac disease

29 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25007843

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Genome sequencing and analysis of the model grass Brachypodium distachyon

1 reference

COCI

https://opencitations.net/index/coci/api/v1/citations/10.1038/NATURE08747

15 July 2023

Identifiers

DOI

10.1186/1471-2164-15-581

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25007843%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

9 March 2020

1 reference

9 September 2019

https://scigraph.springernature.com/pub.10.1186/1471-2164-15-581

1 reference

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25007843%20AND%20SRC:MED&resulttype=core&format=json

9 March 2020

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25007843%20AND%20SRC:MED&resulttype=core&format=json