Affinity proteomics reveals human host factors implicated in discrete stages of LINE-1 retrotransposition (Q24309049)

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24267889%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

Martin S Taylor

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24267889%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

3

John LaCava

John

LaCava

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24267889%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

12

Michael P Rout

Michael P

Rout

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24267889%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

Paolo Mita

4

Paolo

Mita

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24267889%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

Kelly R Molloy

5

Kelly R

Molloy

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24267889%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

Cheng Ran Lisa Huang

6

Cheng Ran Lisa

Huang

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24267889%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

Donghui Li

7

Donghui

Li

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24267889%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

Emily M Adney

8

Emily M

Adney

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24267889%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

Hua Jiang

9

Hua

Jiang

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24267889%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

Kathleen H Burns

10

Kathleen H

Burns

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24267889%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

Brian T Chait

11

Brian T

Chait

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24267889%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

Jef D Boeke

13

Jef D

Boeke

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24267889%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

Lixin Dai

14

Lixin

Dai

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24267889%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

language of work or name

English

0 references

publication date

21 November 2013

0 references

published in

Cell

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24267889%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

volume

155

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24267889%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

issue

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24267889%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

page(s)

1034-1048

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24267889%20AND%20SRC:MED&resulttype=core&format=json

A census of human soluble protein complexes

8 June 2020

cites work

1 reference

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Characterization of LINE-1 ribonucleoprotein particles

19 March 2017

1 reference

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LINE-1 ORF1 protein localizes in stress granules with other RNA-binding proteins, including components of RNA interference RNA-induced silencing complex

19 March 2017

1 reference

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Gamma radiation increases endonuclease-dependent L1 retrotransposition in a cultured cell assay

19 March 2017

1 reference

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The human RNA surveillance factor UPF1 is required for S phase progression and genome stability

19 March 2017

1 reference

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Ribonucleoprotein particle formation is necessary but not sufficient for LINE-1 retrotransposition

19 March 2017

1 reference

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A potential role for RNA interference in controlling the activity of the human LINE-1 retrotransposon

19 March 2017

1 reference

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Hot L1s account for the bulk of retrotransposition in the human population

19 March 2017

1 reference

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Retrotransposons Revisited: The Restraint and Rehabilitation of Parasites

19 March 2017

1 reference

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Human transposon tectonics

19 March 2017

1 reference

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Trimeric structure and flexibility of the L1ORF1 protein in human L1 retrotransposition

19 March 2017

1 reference

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PCNA directs type 2 RNase H activity on DNA replication and repair substrates

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3904357

Determinants for DNA target structure selectivity of the human LINE-1 retrotransposon endonuclease

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3904357

The Elg1 replication factor C-like complex functions in PCNA unloading during DNA replication.

19 March 2017

1 reference

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Comprehensive analysis of diverse ribonucleoprotein complexes.

19 March 2017

1 reference

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Human L1 retrotransposon encodes a conserved endonuclease required for retrotransposition

19 March 2017

1 reference

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Global quantification of mammalian gene expression control

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3904357

Genetic evidence that the non-homologous end-joining repair pathway is involved in LINE retrotransposition

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3904357

Mapping the LINE1 ORF1 protein interactome reveals associated inhibitors of human retrotransposition

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3904357

LINE-1 elements in structural variation and disease

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3904357

Characterization of a synthetic human LINE-1 retrotransposon ORFeus-Hs

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3904357

Rif1 prevents resection of DNA breaks and promotes immunoglobulin class switching

19 March 2017

1 reference

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MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3904357

Somatic mosaicism in neuronal precursor cells mediated by L1 retrotransposition

7 April 2017

1 reference

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Biology of mammalian L1 retrotransposons

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3904357

Human L1 retrotransposition: cis preference versus trans complementation

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3904357

High frequency retrotransposition in cultured mammalian cells

7 April 2017

1 reference

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Reverse Transcriptase Encoded by a Human Transposable Element

7 April 2017

1 reference

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Controlled insertional mutagenesis using a LINE-1 (ORFeus) gene-trap mouse model.

7 April 2017

1 reference

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Enrichment of processed pseudogene transcripts in L1-ribonucleoprotein particles

27 September 2017

1 reference

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Endogenous retrotransposition activates oncogenic pathways in hepatocellular carcinoma

27 September 2017

1 reference

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The emergence of the conserved AAA+ ATPases Pontin and Reptin on the signaling landscape

27 September 2017

1 reference

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hnRNPL and nucleolin bind LINE-1 RNA and function as host factors to modulate retrotransposition

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3904357

MOV10 RNA helicase is a potent inhibitor of retrotransposition in cells

27 September 2017

1 reference

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Identification of hundreds of novel UPF1 target transcripts by direct determination of whole transcriptome stability

27 September 2017

1 reference

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Poly(A) binding protein C1 is essential for efficient L1 retrotransposition and affects L1 RNP formation

27 September 2017

1 reference

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Endogenous MOV10 inhibits the retrotransposition of endogenous retroelements but not the replication of exogenous retroviruses

27 September 2017

1 reference

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Improved methodology for the affinity isolation of human protein complexes expressed at near endogenous levels.

27 September 2017

1 reference

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Evidence that the Upf1-related molecular motor scans the 3'-UTR to ensure mRNA integrity

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3904357

Ataxia telangiectasia mutated (ATM) modulates long interspersed element-1 (L1) retrotransposition in human neural stem cells

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3904357

Timing and spacing of ubiquitin-dependent DNA damage bypass

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3904357

The role of the DNA sliding clamp in Okazaki fragment maturation in archaea and eukaryotes

27 September 2017

1 reference

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Upf1 senses 3'UTR length to potentiate mRNA decay

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3904357

Discrete subcellular partitioning of human retrotransposon RNAs despite a common mechanism of genome insertion

27 September 2017

1 reference

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RVB1/RVB2: running rings around molecular biology

27 September 2017

1 reference

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The take and give between retrotransposable elements and their hosts

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3904357

Affinity isolation and I-DIRT mass spectrometric analysis of the Escherichia coli O157:H7 Sakai RNA polymerase complex.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3904357

Differential inhibition of long interspersed element 1 by APOBEC3 does not correlate with high-molecular-mass-complex formation or P-body association

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3904357

L1 retrotransposition is suppressed by endogenously encoded small interfering RNAs in human cultured cells

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3904357

Cellular inhibitors of long interspersed element 1 and Alu retrotransposition.

27 September 2017

1 reference

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Unconventional translation of mammalian LINE-1 retrotransposons.

27 September 2017

1 reference

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Fluorescent proteins as proteomic probes.

27 September 2017

1 reference

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Nonsense surveillance regulates expression of diverse classes of mammalian transcripts and mutes genomic noise

27 September 2017

1 reference

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A YY1-binding site is required for accurate human LINE-1 transcription initiation

27 September 2017

1 reference

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Nuclear and mitochondrial conversations in cell death: PARP-1 and AIF signaling

27 September 2017

1 reference

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Human L1 element target-primed reverse transcription in vitro

27 September 2017

1 reference

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A new family of chimeric retrotranscripts formed by a full copy of U6 small nuclear RNA fused to the 3' terminus of l1.

27 September 2017

1 reference

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Nucleic acid chaperone activity of the ORF1 protein from the mouse LINE-1 retrotransposon

27 September 2017

1 reference

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The age and evolution of non-LTR retrotransposable elements

27 September 2017

1 reference

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Sequence-specific single-strand RNA binding protein encoded by the human LINE-1 retrotransposon

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3904357

RNA template requirements for target DNA-primed reverse transcription by the R2 retrotransposable element

27 September 2017

1 reference

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Stoichiometry of chromatin-associated protein complexes revealed by label-free quantitative mass spectrometry-based proteomics

27 September 2017

1 reference

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Requirements for polyadenylation at the 3' end of LINE-1 elements

27 September 2017

1 reference

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Cis-preferential LINE-1 reverse transcriptase activity in ribonucleoprotein particles

30 May 2018

1 reference

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Molecular evolution and tempo of amplification of human LINE-1 retrotransposons since the origin of primates.

30 May 2018

1 reference

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Involvement of PARP and poly(ADP-ribosyl)ation in the early stages of apoptosis and DNA replication

30 May 2018

1 reference

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Insights into the DNA cleavage mechanism of human LINE-1 retrotransposon endonuclease

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3904357

Structural and biochemical basis for misfolded RNA recognition by the Ro autoantigen.

29 November 2018

1 reference

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I-DIRT, a general method for distinguishing between specific and nonspecific protein interactions

29 November 2018

1 reference

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Crystal structure of the targeting endonuclease of the human LINE-1 retrotransposon

29 November 2018

1 reference

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A highly active synthetic mammalian retrotransposon

29 November 2018

1 reference

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DNA repair mediated by endonuclease-independent LINE-1 retrotransposition.

29 November 2018

1 reference

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Full-length human L1 insertions retain the capacity for high frequency retrotransposition in cultured cells.

29 November 2018

1 reference

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Identification of critical CpG sites for repression of L1 transcription by DNA methylation

29 November 2018

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PubMed

https://pubmed.ncbi.nlm.nih.gov/24267889

12 December 2020

inferred from PubMed ID database lookup

Multiple epitope tagging of expressed proteins for enhanced detection

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12 December 2020

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Orbital shaker technology for the cultivation of mammalian cells in suspension.

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7 January 2021

Preventing arginine-to-proline conversion in a cell-line-independent manner during cell cultivation under stable isotope labeling by amino acids in cell culture (SILAC) conditions.

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7 January 2021

Automatic identification of proteins with a MALDI-quadrupole ion trap mass spectrometer.

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7 January 2021

ProFound: an expert system for protein identification using mass spectrometric peptide mapping information

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7 January 2021

High recovery FASP applied to the proteomic analysis of microdissected formalin fixed paraffin embedded cancer tissues retrieves known colon cancer markers

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7 January 2021

Multichange isothermal mutagenesis: a new strategy for multiple site-directed mutations in plasmid DNA.

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7 January 2021

Universal sample preparation method for proteome analysis

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7 January 2021

Protocol for micro-purification, enrichment, pre-fractionation and storage of peptides for proteomics using StageTips

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7 January 2021

Use of stable isotope labeling by amino acids in cell culture as a spike-in standard in quantitative proteomics

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7 January 2021

Improved native isolation of endogenous Protein A-tagged protein complexes.

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https://api.crossref.org/works/10.1016%2FJ.CELL.2013.10.021

7 January 2021

10.1016/J.CELL.2013.10.021

Identifiers

DOI

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24267889%20AND%20SRC:MED&resulttype=core&format=json

release_tcjg6jn4ordwnhlnj4xuvnocp4

8 June 2020

Fatcat ID

0 references

1 reference

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24267889%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24267889%20AND%20SRC:MED&resulttype=core&format=json