Widespread regulatory activity of vertebrate microRNA* species (Q24595841)

Ping Mu

4

0 references

Andrea Ventura

Andrea Ventura

5

0 references

Adam C. Siepel

Adam C Siepel

6

0 references

Eric C Lai

Eric C Lai

8

0 references

author name string

Jr-Shiuan Yang

1

0 references

Michael D Phillips

2

0 references

Kevin C Chen

Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP

7

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language of work or name

English

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publication date

February 2011

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published in

RNA

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volume

17

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issue

2

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page(s)

312-26

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cites work

1 reference

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Genome-wide RNA-mediated interference screen identifies miR-19 targets in Notch-induced T-cell acute lymphoblastic leukaemia

24 March 2017

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miR-19 is a key oncogenic component of mir-17-92

24 March 2017

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Genetic dissection of the miR-17~92 cluster of microRNAs in Myc-induced B-cell lymphomas

24 March 2017

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MicroRNA-mediated switching of chromatin-remodelling complexes in neural development

24 March 2017

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Argonaute HITS-CLIP decodes microRNA-mRNA interaction maps

24 March 2017

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miR-199a, a bone morphogenic protein 2-responsive MicroRNA, regulates chondrogenesis via direct targeting to Smad1

24 March 2017

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MicroRNAs: target recognition and regulatory functions

24 March 2017

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Most mammalian mRNAs are conserved targets of microRNAs

24 March 2017

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The impact of microRNAs on protein output

24 March 2017

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An endogenous small interfering RNA pathway in Drosophila

24 March 2017

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Pseudogene-derived small interfering RNAs regulate gene expression in mouse oocytes

24 March 2017

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Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells

24 March 2017

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Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs

24 March 2017

1 reference

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A mammalian microRNA expression atlas based on small RNA library sequencing

24 March 2017

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Transcripts targeted by the microRNA-16 family cooperatively regulate cell cycle progression

24 March 2017

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Systematic identification of microRNA functions by combining target prediction and expression profiling

24 March 2017

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microRNA target predictions across seven Drosophila species and comparison to mammalian targets

24 March 2017

1 reference

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Principles of microRNA-target recognition

24 March 2017

1 reference

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Identification of Drosophila MicroRNA targets

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022280

Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution

24 March 2017

1 reference

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Structural basis for 5'-nucleotide base-specific recognition of guide RNA by human AGO2

24 March 2017

1 reference

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Widespread changes in protein synthesis induced by microRNAs

24 March 2017

1 reference

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c-Myc-regulated microRNAs modulate E2F1 expression

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022280

A microRNA polycistron as a potential human oncogene

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022280

Combinatorial microRNA target predictions

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022280

Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022280

Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022280

Prediction of mammalian microRNA targets

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022280

MicroRNAs modulate hematopoietic lineage differentiation

24 March 2017

1 reference

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Functional siRNAs and miRNAs Exhibit Strand Bias

24 March 2017

1 reference

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Asymmetry in the assembly of the RNAi enzyme complex

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022280

RNA interference is mediated by 21- and 22-nucleotide RNAs

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022280

Vienna RNA secondary structure server

24 March 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022280

MicroRNA MiR-17 retards tissue growth and represses fibronectin expression

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022280

The bifunctional microRNA miR-9/miR-9* regulates REST and CoREST and is downregulated in Huntington's disease

24 March 2017

1 reference

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A human snoRNA with microRNA-like functions

24 March 2017

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Mouse ES cells express endogenous shRNAs, siRNAs, and other Microprocessor-independent, Dicer-dependent small RNAs

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022280

MicroRNA miR-199a* regulates the MET proto-oncogene and the downstream extracellular signal-regulated kinase 2 (ERK2)

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022280

Discovering microRNAs from deep sequencing data using miRDeep

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022280

A microRNA component of the p53 tumour suppressor network

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022280

Identification and characterization of a novel gene, C13orf25, as a target for 13q31-q32 amplification in malignant lymphoma

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022280

Functional anatomy of siRNAs for mediating efficient RNAi in Drosophila melanogaster embryo lysate

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022280

Transfection of small RNAs globally perturbs gene regulation by endogenous microRNAs

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022280

Endogenous siRNAs from naturally formed dsRNAs regulate transcripts in mouse oocytes

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022280

A single Hox locus in Drosophila produces functional microRNAs from opposite DNA strands

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022280

28-way vertebrate alignment and conservation track in the UCSC Genome Browser

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022280

Transactivation of miR-34a by p53 broadly influences gene expression and promotes apoptosis

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022280

Zebrafish MiR-430 promotes deadenylation and clearance of maternal mRNAs

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022280

Connecting microRNA genes to the core transcriptional regulatory circuitry of embryonic stem cells

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022280

The mirtron pathway generates microRNA-class regulatory RNAs in Drosophila

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022280

Transcriptional activation of miR-34a contributes to p53-mediated apoptosis

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022280

A microRNA controlling left/right neuronal asymmetry in Caenorhabditis elegans

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022280

Micro RNAs are complementary to 3' UTR sequence motifs that mediate negative post-transcriptional regulation

7 April 2017

1 reference

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ATP requirements and small interfering RNA structure in the RNA interference pathway

7 April 2017

1 reference

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Expanding the microRNA targeting code: functional sites with centered pairing

7 April 2017

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Deep sequencing reveals differential expression of microRNAs in favorable versus unfavorable neuroblastoma

27 September 2017

1 reference

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Mammalian microRNAs: experimental evaluation of novel and previously annotated genes

27 September 2017

1 reference

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Sorting of Drosophila small silencing RNAs partitions microRNA* strands into the RNA interference pathway

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022280

Hierarchical rules for Argonaute loading in Drosophila

27 September 2017

1 reference

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Distinct mechanisms for microRNA strand selection by Drosophila Argonautes

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022280

Alternative processing of primary microRNA transcripts by Drosha generates 5' end variation of mature microRNA.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022280

Ago2 immunoprecipitation identifies predicted microRNAs in human embryonic stem cells and neural precursors.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022280

The miR-18a* microRNA functions as a potential tumor suppressor by targeting on K-Ras

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022280

A 3'-untranslated region (3'UTR) induces organ adhesion by regulating miR-199a* functions

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022280

Revisiting the principles of microRNA target recognition and mode of action

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022280

Biological principles of microRNA-mediated regulation: shared themes amid diversity

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022280

Characterization of endogenous human Argonautes and their miRNA partners in RNA silencing.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022280

A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022280

The regulatory activity of microRNA* species has substantial influence on microRNA and 3' UTR evolution

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022280

RNA sequence analysis defines Dicer's role in mouse embryonic stem cells

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022280

Tissue-dependent paired expression of miRNAs

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022280

Cell-type-specific signatures of microRNAs on target mRNA expression

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022280

Comprehensive modeling of microRNA targets predicts functional non-conserved and non-canonical sites

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022280

Deep conservation of microRNA-target relationships and 3'UTR motifs in vertebrates, flies, and nematodes

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022280

High throughput sequencing of microRNAs in chicken somites

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022280

Differential regulation of microRNAs by p53 revealed by massively parallel sequencing: miR-34a is a p53 target that induces apoptosis and G1-arrest.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022280

A Genome-Wide Map of Conserved MicroRNA Targets in C. elegans

28 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21177881

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1261/RNA.2537911

1 reference

385412

385412

1 reference

1 reference

1 reference