T-Coffee: a web server for the multiple sequence alignment of protein and RNA sequences using structural information and homology extension (Q24603117)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21558174%20AND%20SRC:MED&resulttype=core&format=json

31 January 2020

title

T-Coffee: a web server for the multiple sequence alignment of protein and RNA sequences using structural information and homology extension (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21558174%20AND%20SRC:MED&resulttype=core&format=json

31 January 2020

1 reference

0 references

1 reference

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21558174%20AND%20SRC:MED&resulttype=core&format=json

31 January 2020

Sébastien Moretti

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21558174%20AND%20SRC:MED&resulttype=core&format=json

31 January 2020

Ioannis Xenarios

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21558174%20AND%20SRC:MED&resulttype=core&format=json

31 January 2020

Miquel Orobitg

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21558174%20AND%20SRC:MED&resulttype=core&format=json

31 January 2020

Cedric Notredame

8

1 reference

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31 January 2020

author name string

Alberto Montanyola

5

1 reference

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31 January 2020

Jia-Ming Chang

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21558174%20AND%20SRC:MED&resulttype=core&format=json

31 January 2020

Jean-François Taly

7

1 reference

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31 January 2020

language of work or name

English

0 references

publication date

9 May 2011

1 reference

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31 January 2020

published in

Nucleic Acids Research

1 reference

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31 January 2020

volume

39

1 reference

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31 January 2020

page(s)

W13-7

1 reference

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31 January 2020

issue

Web Server issue

1 reference

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Creative Commons Attribution-NonCommercial 3.0 Unported

31 January 2020

copyright license

start time

14 November 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Upcoming challenges for multiple sequence alignment methods in the high-throughput era

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3125728

R-Coffee: a method for multiple alignment of non-coding RNA

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3125728

M-Coffee: combining multiple sequence alignment methods with T-Coffee

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3125728

Automatic assessment of alignment quality

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3125728

ProbCons: Probabilistic consistency-based multiple sequence alignment

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3125728

MUSCLE: multiple sequence alignment with high accuracy and high throughput

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3125728

SAGA: sequence alignment by genetic algorithm

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3125728

T-Coffee: A novel method for fast and accurate multiple sequence alignment

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3125728

On the complexity of multiple sequence alignment

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3125728

Recent developments in the MAFFT multiple sequence alignment program

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3125728

PROMALS3D: a tool for multiple protein sequence and structure alignments

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3125728

PROMALS: towards accurate multiple sequence alignments of distantly related proteins.

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3125728

The iRMSD: a local measure of sequence alignment accuracy using structural information

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3125728

Expresso: automatic incorporation of structural information in multiple sequence alignments using 3D-Coffee

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3125728

PROTOGENE: turning amino acid alignments into bona fide CDS nucleotide alignments

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3125728

3DCoffee@igs: a web server for combining sequences and structures into a multiple sequence alignment

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3125728

COFFEE: an objective function for multiple sequence alignments

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3125728

Multiple DNA and protein sequence alignment based on segment-to-segment comparison

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3125728

SSAP: sequential structure alignment program for protein structure comparison

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3125728

Cloud-Coffee: implementation of a parallel consistency-based multiple alignment algorithm in the T-Coffee package and its benchmarking on the Amazon Elastic-Cloud

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3125728

Alignment uncertainty and genomic analysis

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3125728

Kalign, Kalignvu and Mumsa: web servers for multiple sequence alignment

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3125728

PCMA: fast and accurate multiple sequence alignment based on profile consistency.

30 May 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FNAR%2FGKR245

Sequence progressive alignment, a framework for practical large-scale probabilistic consistency alignment.

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FNAR%2FGKR245

Simple cDNA normalization using kamchatka crab duplex-specific nuclease

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FNAR%2FGKR245

21 January 2018

Identifiers

DOI

10.1093/NAR/GKR245

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21558174%20AND%20SRC:MED&resulttype=core&format=json

journals/nar/TommasoMXOMCTN11

31 January 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21558174%20AND%20SRC:MED&resulttype=core&format=json

31 January 2020

2 references