The Ras protein superfamily: evolutionary tree and role of conserved amino acids (Q24603374)

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21 January 2020

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30 October 2020

The Ras protein superfamily: evolutionary tree and role of conserved amino acids (English)

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28 September 2019

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20 November 2019

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28 November 2019

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30 October 2020

1

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21 January 2020

Antonio Rausell

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3

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21 January 2020

author name string

Gloria Fuentes

series ordinal

2

1 reference

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21 January 2020

Alfonso Valencia

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4

1 reference

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21 January 2020

language of work or name

English

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publication date

1 January 2012

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21 January 2020

23 January 2012

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30 October 2020

13

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inferred from page(s)

published in

Journal of Cell Biology

6 references

20 June 2019

28 September 2019

20 November 2019

28 November 2019

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21 January 2020

30 October 2020

196

1 reference

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21 January 2020

issue

2

1 reference

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21 January 2020

page(s)

189-201

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Rho GTPases in hematopoiesis and hemopathies

21 January 2020

cites work

1 reference

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The Pfam protein families database

7 April 2017

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InParanoid 7: new algorithms and tools for eukaryotic orthology analysis

7 April 2017

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Upcoming challenges for multiple sequence alignment methods in the high-throughput era

7 April 2017

1 reference

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A novel switch region regulates H-ras membrane orientation and signal output

7 April 2017

1 reference

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Evolution of the Rho family of ras-like GTPases in eukaryotes

7 April 2017

1 reference

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A molecular timescale of eukaryote evolution and the rise of complex multicellular life

7 April 2017

1 reference

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Arf, Arl, Arp and Sar proteins: a family of GTP-binding proteins with a structural device for 'front-back' communication

7 April 2017

1 reference

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Small GTPases: versatile signaling switches in plants

7 April 2017

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Selection in the evolution of gene duplications

7 April 2017

1 reference

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Novel G proteins, Rag C and Rag D, interact with GTP-binding proteins, Rag A and Rag B

7 April 2017

1 reference

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Two novel human RAB genes with near identical sequence each map to a telomere-associated region: the subtelomeric region of 22q13.3 and the ancestral telomere band 2q13

7 April 2017

1 reference

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Crystal structures of the small G protein Rap2A in complex with its substrate GTP, with GDP and with GTPgammaS.

7 April 2017

1 reference

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ARD 1, a 64-kDa guanine nucleotide-binding protein with a carboxyl-terminal ADP-ribosylation factor domain

7 April 2017

1 reference

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Sea Anemone Genome Reveals Ancestral Eumetazoan Gene Repertoire and Genomic Organization

7 April 2017

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The distinct conformational dynamics of K-Ras and H-Ras A59G

7 April 2017

1 reference

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Crystal structures at 2.2 A resolution of the catalytic domains of normal ras protein and an oncogenic mutant complexed with GDP

7 April 2017

1 reference

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Rho GTPases: biochemistry and biology

7 April 2017

2 references

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WebLogo: A Sequence Logo Generator

7 April 2017

1 reference

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MrBayes 3: Bayesian phylogenetic inference under mixed models

7 April 2017

1 reference

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Rab proteins as membrane organizers

7 April 2017

1 reference

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The guanine nucleotide-binding switch in three dimensions

7 April 2017

1 reference

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Rab GTPases as coordinators of vesicle traffic

7 April 2017

1 reference

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Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation

7 April 2017

1 reference

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Identification of an organelle receptor for myosin-Va

7 April 2017

1 reference

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Molecular dynamics simulations of Gly-12-->Val mutant of p21(ras): dynamic inhibition mechanism

7 April 2017

1 reference

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Evolution of the Rab family of small GTP-binding proteins

7 April 2017

1 reference

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Model of the ran-RCC1 interaction using biochemical and docking experiments

7 April 2017

1 reference

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Phylogenetic analysis. Models and estimation procedures

7 April 2017

1 reference

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Rho GTPases and their effector proteins

7 April 2017

1 reference

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A new generation of homology search tools based on probabilistic inference

7 April 2017

1 reference

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Multiple alignment of DNA sequences with MAFFT

7 April 2017

1 reference

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Mammalian Rho GTPases: new insights into their functions from in vivo studies

7 April 2017

1 reference

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Ras oncogenes: split personalities

7 April 2017

1 reference

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Suppression of long-branch attraction artefacts in the animal phylogeny using a site-heterogeneous model

7 April 2017

1 reference

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The Ras superfamily at a glance

7 April 2017

1 reference

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Structural basis for activation of ARF GTPase: mechanisms of guanine nucleotide exchange and GTP-myristoyl switching

7 April 2017

1 reference

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The impact of multiple protein sequence alignment on phylogenetic estimation

7 April 2017

1 reference

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Deep phylogeny--how a tree can help characterize early life on Earth.

27 September 2017

1 reference

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Analysis of relative gene dosage and expression differences of the paralogs RABL2A and RABL2B by Pyrosequencing

27 September 2017

1 reference

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Protein interactions and ligand binding: from protein subfamilies to functional specificity

27 September 2017

1 reference

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Phylogeny and evolution of Rab7 and Rab9 proteins

27 September 2017

1 reference

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Chapter 5: rab proteins and their interaction partners

27 September 2017

1 reference

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Wnt signaling pathways meet Rho GTPases.

27 September 2017

1 reference

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Mapping the nucleotide and isoform-dependent structural and dynamical features of Ras proteins

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3265948

Comparative genomics of the Rab protein family in Apicomplexan parasites

27 September 2017

1 reference

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Choose your own path: specificity in Ras GTPase signaling

27 September 2017

1 reference

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Central roles of small GTPases in the development of cell polarity in yeast and beyond

27 September 2017

1 reference

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Nomenclature for the human Arf family of GTP-binding proteins: ARF, ARL, and SAR proteins

27 September 2017

1 reference

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Maintenance of ancestral complexity and non-metazoan genes in two basal cnidarians

27 September 2017

1 reference

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The Arf-like GTPase Arl1 and its role in membrane traffic.

27 September 2017

1 reference

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Always look on the bright site of Rho: structural implications for a conserved intermolecular interface

27 September 2017

1 reference

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Human RAS superfamily proteins and related GTPases

27 September 2017

1 reference

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Signaling specificity by Ras family GTPases is determined by the full spectrum of effectors they regulate

27 September 2017

1 reference

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Phylogeny estimation: traditional and Bayesian approaches

27 September 2017

1 reference

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Conformational display: a role for switch polymorphism in the superfamily of regulatory GTPases

27 September 2017

1 reference

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The many faces of Ras: recognition of small GTP-binding proteins

27 September 2017

1 reference

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Multiple sequence alignment in phylogenetic analysis

27 September 2017

1 reference

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Distinct structural elements of rab5 define its functional specificity.

27 September 2017

1 reference

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GTPase domains of ras p21 oncogene protein and elongation factor Tu: analysis of three-dimensional structures, sequence families, and functional sites

27 September 2017

1 reference

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Switch-of-Function Mutants Based on Morphology Classification of Ras Superfamily Small GTPases

27 September 2017

1 reference

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Molecular basis for Rac1 recognition by guanine nucleotide exchange factors

30 May 2018

1 reference

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Calculation of pathways for the conformational transition between the GTP- and GDP-bound states of the Ha-ras-p21 protein: calculations with explicit solvent simulations and comparison with calculations in vacuum.

30 May 2018

1 reference

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Structural principles for the multispecificity of small GTP-binding proteins

30 May 2018

1 reference

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Rho GTPases and their effector proteins

21 January 2018

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Molecular dynamics simulation of the solution structures of Ha-ras-p21 GDP and GTP complexes: flexibility, possible hinges, and levers of the conformational transition.

21 January 2018

1 reference

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Differential expression during embryogenesis of three genes clustered in the Ras1 region of Drosophila melanogaster

21 January 2018

1 reference

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Ras classical effectors: new tales from in silico complexes

21 January 2018

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Structural Basis for Activation of ARF GTPase

21 January 2018

1 reference

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Comparison of the accuracies of several phylogenetic methods using protein and DNA sequences.

21 January 2018

1 reference

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Loss of ancestral genes in the genomic evolution of Ciona intestinalis.

21 January 2018

1 reference

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Comparative and evolutionary analysis of genes encoding small GTPases and their activating proteins in eukaryotic genomes

21 January 2018

1 reference

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Functional genomic analysis of the ADP-ribosylation factor family of GTPases: phylogeny among diverse eukaryotes and function in C. elegans

21 January 2018

1 reference

https://api.crossref.org/works/10.1083%2FJCB.201103008

Automated computation of low-energy pathways for complex rearrangements in proteins: application to the conformational switch of Ras p21.

21 January 2018

1 reference

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Intraflagellar transport protein 27 is a small G protein involved in cell-cycle control

21 January 2018

1 reference

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The ras protein family: evolutionary tree and role of conserved amino acids

21 January 2018

1 reference

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Phylogeny of the CDC25 homology domain reveals rapid differentiation of Ras pathways between early animals and fungi.

21 January 2018

1 reference

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A Genome-wide Ras-Effector Interaction Network

21 January 2018

1 reference

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Automatic methods for predicting functionally important residues

21 January 2018

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12 December 2020

Rab GTPases at a glance

1 reference

12 December 2020

Evaluation of the novel gene Rabl3 in the regulation of proliferation and motility in human cancer cells

1 reference

12 December 2020

Distribution and functional diversification of the ras superfamily in Saccharomyces cerevisiae

1 reference

12 December 2020

Effector recognition by the small GTP-binding proteins Ras and Ral

1 reference

12 December 2020

Identifiers

DOI

10.1083/JCB.201103008

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22270915%20AND%20SRC:MED&resulttype=core&format=json

21 January 2020

1 reference

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22270915%20AND%20SRC:MED&resulttype=core&format=json

21 January 2020

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22270915%20AND%20SRC:MED&resulttype=core&format=json