PROTEUS2: a web server for comprehensive protein structure prediction and structure-based annotation (Q24646039)

1

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Joseph A Cruz

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Savita Shrivastava

3

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David Arndt

4

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Mark Berjanskii

A comparative study of available software for high-accuracy homology modeling: from sequence alignments to structural models

5

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language of work or name

English

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publication date

1 July 2008

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published in

Nucleic Acids Research

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volume

36

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issue

Web Server issue

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page(s)

W202-9

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cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447806

Escherichia coli K-12: a cooperatively developed annotation snapshot--2005

7 April 2017

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MIPS: analysis and annotation of proteins from whole genomes in 2005.

7 April 2017

1 reference

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BASys: a web server for automated bacterial genome annotation

7 April 2017

1 reference

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TMB-Hunt: a web server to screen sequence sets for transmembrane beta-barrel proteins

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447806

All are not equal: a benchmark of different homology modeling programs

7 April 2017

1 reference

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BacMap: an interactive picture atlas of annotated bacterial genomes

7 April 2017

1 reference

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SWISS-MODEL: An automated protein homology-modeling server

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447806

Advanced sequencing technologies and their wider impact in microbiology

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447806

Improved prediction of signal peptides: SignalP 3.0

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447806

Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447806

Protein secondary structure prediction based on position-specific scoring matrices

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447806

The PredictProtein server

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447806

Application of multiple sequence alignment profiles to improve protein secondary structure prediction

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447806

PPT-DB: the protein property prediction and testing database.

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447806

Accurate prediction of protein secondary structure and solvent accessibility by consensus combiners of sequence and structure information

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447806

Automated bacterial genome analysis and annotation

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447806

Improving the accuracy of protein secondary structure prediction using structural alignment

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447806

Comparing and combining predictors of mostly disordered proteins.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447806

Porter: a new, accurate server for protein secondary structure prediction

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447806

PRED-TMBB: a web server for predicting the topology of beta-barrel outer membrane proteins

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447806

Static benchmarking of membrane helix predictions

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447806

Cyclic coordinate descent: A robotics algorithm for protein loop closure.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447806

PEP: Predictions for Entire Proteomes

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447806

Enhancement of protein modeling by human intervention in applying the automatic programs 3D-JIGSAW and 3D-PSSM.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447806

EVA: continuous automatic evaluation of protein structure prediction servers.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447806

Comparing function and structure between entire proteomes

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447806

Use of chemical shifts in macromolecular structure determination

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447806

WebMol--a Java-based PDB viewer.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447806

Metagrowth: a new resource for the building of metabolic hypotheses in microbiology

27 September 2017

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FNAR%2FGKN255

β-Sheet secondary structure of an LDL receptor domain from complement factor I by consensus structure predictions and spectroscopy

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FNAR%2FGKN255

21 January 2018

Identifiers

DOI

10.1093/NAR/GKN255

1 reference

journals/nar/MontgomerieCSABW08

3863349

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

3863349

1 reference

1 reference

1 reference