Comparative metagenomics revealed commonly enriched gene sets in human gut microbiomes (Q24652180)

20

0 references

Hiroshi Mori

Hiroshi Mori

13

0 references

Takehiko Itoh

Takehiko Itoh

2

0 references

Kikuji Itoh

16

Kikuji Itoh

0 references

Kenshiro Oshima

4

Kenshiro Oshima

0 references

Todd D Taylor

11

Todd D Taylor

0 references

Vineet K Sharma

9

Vineet K Sharma

0 references

Hidetoshi Morita

8

Hidetoshi Morita

0 references

Hidehiro Toh

5

Hidehiro Toh

0 references

Hideto Takami

7

Hideto Takami

0 references

Tomomi Kuwahara

3

Tomomi Kuwahara

0 references

author name string

Ken Kurokawa

1

0 references

Atsushi Toyoda

6

0 references

Tulika P Srivastava

10

0 references

Hideki Noguchi

12

0 references

Yoshitoshi Ogura

14

0 references

Dusko S Ehrlich

15

0 references

Toshihisa Takagi

17

0 references

Tetsuya Hayashi

A humanized gnotobiotic mouse model of host-archaeal-bacterial mutualism

19

0 references

language of work or name

English

0 references

publication date

31 August 2007

0 references

published in

DNA Research

0 references

volume

14

0 references

page(s)

169-81

0 references

issue

4

0 references

cites work

1 reference

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Metagenomic analysis of the human distal gut microbiome

7 April 2017

1 reference

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Molecular genetic anatomy of inter- and intraserotype variation in the human bacterial pathogen group A Streptococcus

7 April 2017

1 reference

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Pfam: clans, web tools and services

7 April 2017

1 reference

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Diversity of the human intestinal microbial flora

7 April 2017

1 reference

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Measuring genome conservation across taxa: divided strains and united kingdoms

7 April 2017

1 reference

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Molecular monitoring of succession of bacterial communities in human neonates

7 April 2017

1 reference

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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

7 April 2017

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Role of Mobile DNA in the Evolution of Vancomycin-Resistant Enterococcus faecalis

7 April 2017

1 reference

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An obesity-associated gut microbiome with increased capacity for energy harvest

7 April 2017

1 reference

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Microbial ecology: human gut microbes associated with obesity

7 April 2017

1 reference

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Host-bacterial mutualism in the human intestine

7 April 2017

1 reference

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Environmental genome shotgun sequencing of the Sargasso Sea

7 April 2017

1 reference

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Fitting a mixture model by expectation maximization to discover motifs in biopolymers

7 April 2017

1 reference

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The gut microbiota as an environmental factor that regulates fat storage

7 April 2017

1 reference

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An efficient algorithm for large-scale detection of protein families

7 April 2017

1 reference

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Diet, anaerobic bacterial metabolism, and colon cancer: a review of the literature

7 April 2017

1 reference

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Intestinal microflora in early infancy: composition and development

7 April 2017

1 reference

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Gut flora in health and disease

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2533590

Commensal host-bacterial relationships in the gut

7 April 2017

1 reference

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Dietary modulation of the human colonic microbiota: introducing the concept of prebiotics

7 April 2017

1 reference

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Ecological and evolutionary forces shaping microbial diversity in the human intestine

7 April 2017

1 reference

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Comparative metagenomics of microbial communities

7 April 2017

1 reference

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Recognition of commensal microflora by toll-like receptors is required for intestinal homeostasis

7 April 2017

1 reference

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Open source clustering software

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2533590

Community genomics among stratified microbial assemblages in the ocean's interior

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2533590

Reduced diversity of faecal microbiota in Crohn's disease revealed by a metagenomic approach

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2533590

MetaGene: prokaryotic gene finding from environmental genome shotgun sequences

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2533590

Review article: the role of bacteria in onset and perpetuation of inflammatory bowel disease

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2533590

The multidrug-resistant human pathogen Clostridium difficile has a highly mobile, mosaic genome

28 September 2017

1 reference

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The co-evolution of host cationic antimicrobial peptides and microbial resistance

28 September 2017

1 reference

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Metagenomics: DNA sequencing of environmental samples.

28 September 2017

1 reference

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Immunity, inflammation, and allergy in the gut.

28 September 2017

1 reference

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The Butyrivibrio fibrisolvens tet(W) gene is carried on the novel conjugative transposon TnB1230, which contains duplicated nitroreductase coding sequences

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2533590

PCAP: a whole-genome assembly program

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2533590

Microbial biota of the human intestine: a tribute to some pioneering scientists

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2533590

Age and disease related changes in intestinal bacterial populations assessed by cell culture, 16S rRNA abundance, and community cellular fatty acid profiles

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2533590

Biodiversity and ecosystem productivity in a fluctuating environment: the insurance hypothesis

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2533590

A novel method for making nested deletions and its application for sequencing of a 300 kb region of human APP locus

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2533590

Evidence for a chromosome-borne resistance transposon (Tn916) in Streptococcus faecalis that is capable of "conjugal" transfer in the absence of a conjugative plasmid

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2533590

Comparison of fecal microflora of elderly persons in rural and urban areas of Japan.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2533590

Food-derived mutagens and carcinogens

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2533590

Role of human microflora in health and disease

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2533590

Transfer of vancomycin resistance transposon Tn1549 from Clostridium symbiosum to Enterococcus spp. in the gut of gnotobiotic mice

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2533590

Characterization of transposon Tn1549, conferring VanB-type resistance in Enterococcus spp.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2533590

A model of host-microbial interactions in an open mammalian ecosystem

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2533590

Investigations into the influence of host genetics on the predominant eubacteria in the faecal microflora of children.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2533590

Characterization of a Tn5382-like transposon containing the vanB2 gene cluster in a Clostridium strain isolated from human faeces

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2533590

SHOT: a web server for the construction of genome phylogenies

28 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17916580

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/DNARES/DSM018

1 reference

425723

425723

1 reference

1 reference

1 reference