Genomic transcriptional response to loss of chromosomal supercoiling in Escherichia coli (Q24809586)

6

object named as

Nicholas R Cozzarelli

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author name string

Brian J Peter

1

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Javier Arsuaga

2

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Adam M Breier

3

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Arkady B Khodursky

Spatial patterns of transcriptional activity in the chromosome of Escherichia coli

4

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language of work or name

English

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publication date

2004

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published in

Genome Biology

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volume

5

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issue

11

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page(s)

R87

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cites work

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Probing the ArcA-P modulon of Escherichia coli by whole genome transcriptional analysis and sequence recognition profiling.

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28 September 2017

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Tethering sigma70 to RNA polymerase reveals high in vivo activity of sigma factors and sigma70-dependent pausing at promoter-distal locations

28 September 2017

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Supercoiling and denaturation in Gal repressor/heat unstable nucleoid protein (HU)-mediated DNA looping

28 September 2017

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Alteration of Escherichia coli topoisomerase IV to novobiocin resistance

28 September 2017

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A microarray-based antibiotic screen identifies a regulatory role for supercoiling in the osmotic stress response of Escherichia coli

28 September 2017

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Topoisomerase function during bacterial responses to environmental challenge

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Global analysis of mRNA decay and abundance in Escherichia coli at single-gene resolution using two-color fluorescent DNA microarrays

28 September 2017

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A molecular mechanism for the repression of transcription by the H-NS protein

28 September 2017

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An architectural role of the Escherichia coli chromatin protein FIS in organising DNA.

28 September 2017

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Escherichia coli cell cycle control genes affect chromosome superhelicity

28 September 2017

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A role for DNA supercoiling in the regulation of the cytochrome bd oxidase of Escherichia coli.

28 September 2017

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Preferential relaxation of positively supercoiled DNA by E. coli topoisomerase IV in single-molecule and ensemble measurements.

28 September 2017

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DNA microarray analysis of gene expression in response to physiological and genetic changes that affect tryptophan metabolism in Escherichia coli

28 September 2017

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Analysis of topoisomerase function in bacterial replication fork movement: use of DNA microarrays

28 September 2017

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Suppression of chromosome segregation defects of Escherichia coli muk mutants by mutations in topoisomerase I.

28 September 2017

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tRNA synthetase mutants of Escherichia coli K-12 are resistant to the gyrase inhibitor novobiocin

28 September 2017

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Information processing by RNA polymerase: recognition of regulatory signals during RNA chain elongation

28 September 2017

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Topoisomerase IV, not gyrase, decatenates products of site-specific recombination in Escherichia coli

28 September 2017

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Transcriptional activation by protein-induced DNA bending: evidence for a DNA structural transmission model

28 September 2017

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28 September 2017

Quinolone mode of action

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Topoisomerase IV is a target of quinolones in Escherichia coli

28 September 2017

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Global regulation of gene expression in Escherichia coli

28 September 2017

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Anchoring of DNA to the bacterial cytoplasmic membrane through cotranscriptional synthesis of polypeptides encoding membrane proteins or proteins for export: a mechanism of plasmid hypernegative supercoiling in mutants deficient in DNA topoisomerase

28 September 2017

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Penetration of lipophilic agents with multiple protonation sites into bacterial cells: tetracyclines and fluoroquinolones as examples

28 September 2017

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Topological promoter coupling in Escherichia coli: delta topA-dependent activation of the leu-500 promoter on a plasmid

28 September 2017

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DNA supercoiling in gyrase mutants

28 September 2017

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Fusions of the Escherichia coli gyrA and gyrB control regions to the galactokinase gene are inducible by coumermycin treatment

28 September 2017

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DNA supercoiling and prokaryotic transcription

28 September 2017

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DNA gyrase, CS7.4, and the cold shock response in Escherichia coli

28 September 2017

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Novobiocin and coumermycin inhibit DNA supercoiling catalyzed by DNA gyrase

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545778

Superhelical Escherichia coli DNA: Relaxation by coumermycin

28 September 2017

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Nalidixic acid resistance: A second genetic character involved in DNA gyrase activity

28 September 2017

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DNA gyrase on the bacterial chromosome: DNA cleavage induced by oxolinic acid

28 September 2017

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Mechanism of action of nalidixic acid: Purification of Escherichia coli nalA gene product and its relationship to DNA gyrase and a novel nicking-closing enzyme

28 September 2017

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Determination of the number of superhelical turns in simian virus 40 DNA by gel electrophoresis

28 September 2017

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Activation of transcription initiation from a stable RNA promoter by a Fis protein-mediated DNA structural transmission mechanism

28 September 2017

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Downstream DNA sequence effects on transcription elongation. Allosteric binding of nucleoside triphosphates facilitates translocation via a ratchet motion

30 May 2018

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Escherichia coli tyrT gene transcription is sensitive to DNA supercoiling in its native chromosomal context: effect of DNA topoisomerase IV overexpression on tyrT promoter function

30 May 2018

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Functional dissection of Escherichia coli promoters: information in the transcribed region is involved in late steps of the overall process.

30 May 2018

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All three elements of the lac ps promoter mediate its transcriptional response to DNA supercoiling

30 May 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545778

In vitro assembly of a prepriming complex at the origin of the Escherichia coli chromosome.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545778

Effect of varying the supercoiling of DNA on transcription and its regulation.

19 June 2018

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The anti-initial transcribed sequence, a portable sequence that impedes promoter escape, requires sigma70 for function

28 November 2018

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28 November 2018

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28 November 2018

1 reference

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28 November 2018

1 reference

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DNA gyrase and topoisomerase IV on the bacterial chromosome: quinolone-induced DNA cleavage.

28 November 2018

1 reference

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Identification of two new genes, mukE and mukF, involved in chromosome partitioning in Escherichia coli

28 November 2018

1 reference

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Topoisomerase mutations affect the relative abundance of many Escherichia coli proteins.

28 November 2018

1 reference

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Escherichia coli DNA topoisomerase I mutants have compensatory mutations in DNA gyrase genes.

28 November 2018

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The expression of the Escherichia coli fis gene is strongly dependent on the superhelical density of DNA

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An Escherichia coli mutant thermosensitive in the B subunit of DNA gyrase: effect on the structure and replication of the colicin E1 plasmid in vitro

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Escherichia coli DNA topoisomerase I mutants: Increased supercoiling is corrected by mutations near gyrase genes

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Role of Escherichia coli RecBC enzyme in SOS induction

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The Interaction of Coumarin Antibiotics with Fragments of the DNA Gyrase B Protein†

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Genome-wide expression monitoring in Saccharomyces cerevisiae

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Identifiers

DOI

10.1186/GB-2004-5-11-R87

1 reference

Dimensions Publication ID

1030681153

0 references

1 reference

1 reference

PubMed publication ID

15535863

1 reference