Common and specific amino acid residues in the prokaryotic polypeptide release factors RF1 and RF2: possible functional implications (Q24814464)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16162810%20AND%20SRC:MED&resulttype=core&format=json

6 January 2020

title

Common and specific amino acid residues in the prokaryotic polypeptide release factors RF1 and RF2: possible functional implications (English)

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6 January 2020

1

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6 January 2020

Olga V Kalinina

series ordinal

2

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6 January 2020

Mikhail Gelfand

series ordinal

3

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6 January 2020

author name string

Lev L Kisselev

series ordinal

4

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6 January 2020

language of work or name

English

0 references

publication date

14 September 2005

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6 January 2020

published in

Nucleic Acids Research

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6 January 2020

volume

33

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6 January 2020

issue

16

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6 January 2020

page(s)

5226-5234

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16162810%20AND%20SRC:MED&resulttype=core&format=json

Eukaryotic release factors (eRFs) history

6 January 2020

cites work

1 reference

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Termination of translation: interplay of mRNA, rRNAs and release factors?

7 April 2017

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The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools

7 April 2017

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A highly conserved eukaryotic protein family possessing properties of polypeptide chain release factor

7 April 2017

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Basic local alignment search tool

7 April 2017

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Structure of the Escherichia coli ribosomal termination complex with release factor 2

7 April 2017

1 reference

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A cryo-electron microscopic study of ribosome-bound termination factor RF2

7 April 2017

1 reference

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Bacterial polypeptide release factor RF2 is structurally distinct from eukaryotic eRF1

7 April 2017

1 reference

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The crystal structure of human eukaryotic release factor eRF1--mechanism of stop codon recognition and peptidyl-tRNA hydrolysis

7 April 2017

1 reference

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Functional characterization of yeast mitochondrial release factor 1.

7 April 2017

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Stop codons and UGG promote efficient binding of the polypeptide release factor eRF1 to the ribosomal A site

7 April 2017

1 reference

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Mapping functionally important motifs SPF and GGQ of the decoding release factor RF2 to the Escherichia coli ribosome by hydroxyl radical footprinting. Implications for macromolecular mimicry and structural changes in RF2

7 April 2017

1 reference

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Stop codon recognition in ciliates: Euplotes release factor does not respond to reassigned UGA codon

7 April 2017

1 reference

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Terminating eukaryote translation: domain 1 of release factor eRF1 functions in stop codon recognition

7 April 2017

1 reference

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Inferring phylogenies from protein sequences by parsimony, distance, and likelihood methods

7 April 2017

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SDPpred: a tool for prediction of amino acid residues that determine differences in functional specificity of homologous proteins.

7 April 2017

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Driving change: the evolution of alternative genetic codes.

28 September 2017

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Molecular mimicry in the decoding of translational stop signals.

28 September 2017

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Making sense of mimic in translation termination

28 September 2017

1 reference

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Release of peptide promoted by the GGQ motif of class 1 release factors regulates the GTPase activity of RF3.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1214553

Omnipotent decoding potential resides in eukaryotic translation termination factor eRF1 of variant-code organisms and is modulated by the interactions of amino acid sequences within domain 1.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1214553

DIVERGE: phylogeny-based analysis for functional-structural divergence of a protein family.

28 September 2017

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Highly conserved NIKS tetrapeptide is functionally essential in eukaryotic translation termination factor eRF1.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1214553

A tripeptide discriminator for stop codon recognition

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1214553

On the molecular discrimination between adenine and guanine by proteins

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1214553

Class-1 translation termination factors: invariant GGQ minidomain is essential for release activity and ribosome binding but not for stop codon recognition

28 September 2017

1 reference

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Protein-RNA interactions: a structural analysis

28 September 2017

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Mimicry grasps reality in translation termination

28 September 2017

1 reference

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The accuracy of codon recognition by polypeptide release factors

28 September 2017

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Themes in RNA-protein recognition.

28 September 2017

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Conversion of omnipotent translation termination factor eRF1 into ciliate-like UGA-only unipotent eRF1.

28 September 2017

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The ribosomal binding and peptidyl-tRNA hydrolysis functions of Escherichia coli release factor 2 are linked through residue 246

30 May 2018

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Electrostatic potential of nucleotide-free protein is sufficient for discrimination between adenine and guanine-specific binding sites

30 May 2018

1 reference

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Automated selection of positions determining functional specificity of proteins by comparative analysis of orthologous groups in protein families.

28 November 2018

1 reference

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A tripeptide 'anticodon' deciphers stop codons in messenger RNA.

28 November 2018

1 reference

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Mutations in the highly conserved GGQ motif of class 1 polypeptide release factors abolish ability of human eRF1 to trigger peptidyl-tRNA hydrolysis.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1214553

Amber (UAG) suppressors affected in UGA/UAA-specific polypeptide release factor 2 of bacteria: genetic prediction of initial binding to ribosome preceding stop codon recognition.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1214553

The essential role of the invariant GGQ motif in the function and stability in vivo of bacterial release factors RF1 and RF2

28 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16162810

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Structural analyses of peptide release factor 1 from Thermotoga maritima reveal domain flexibility required for its interaction with the ribosome

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16162810

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKI841

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16162810%20AND%20SRC:MED&resulttype=core&format=json

6 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16162810%20AND%20SRC:MED&resulttype=core&format=json

6 January 2020

PubMed publication ID

16162810

1 reference