Surprises in the 3'-end: 'U' can decide too! (Q26800072)

Europe PubMed Central

title

Surprises in the 3'-end: 'U' can decide too! (English)

0 references

Inês J Silva

2

0 references

Sandra Cristina Viegas

object named as

Sandra C Viegas

1

0 references

Rute Gonçalves Matos

object named as

Rute G Matos

4

0 references

Cecília Maria Arraiano

object named as

Cecilia M Arraiano

5

0 references

author name string

Patricia Apura

RNA degradation by the exosome is promoted by a nuclear polyadenylation complex

3

0 references

language of work or name

English

0 references

publication date

September 2015

0 references

published in

FEBS Journal

0 references

volume

282

0 references

issue

18

0 references

page(s)

3489-99

0 references

cites work

1 reference

https://api.crossref.org/works/10.1111%2FFEBS.13377

A new yeast poly(A) polymerase complex involved in RNA quality control

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FFEBS.13377

Mammalian DIS3L2 exoribonuclease targets the uridylated precursors of let-7 miRNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FFEBS.13377

A role for the Perlman syndrome exonuclease Dis3l2 in the Lin28-let-7 pathway

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FFEBS.13377

Exonuclease hDIS3L2 specifies an exosome-independent 3'-5' degradation pathway of human cytoplasmic mRNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FFEBS.13377

The exoribonuclease Dis3L2 defines a novel eukaryotic RNA degradation pathway

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FFEBS.13377

Mechanism and regulation of mRNA polyadenylation

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FFEBS.13377

A history of poly A sequences: from formation to factors to function

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FFEBS.13377

Polyadenylation: a tail of two complexes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FFEBS.13377

An extensive network of coupling among gene expression machines

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FFEBS.13377

Pre-mRNA processing reaches back to transcription and ahead to translation

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FFEBS.13377

Identification of a novel isoform of poly(A) polymerase, TPAP, specifically present in the cytoplasm of spermatogenic cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FFEBS.13377

A novel nuclear human poly(A) polymerase (PAP), PAP gamma

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FFEBS.13377

Complex alternative RNA processing generates an unexpected diversity of poly(A) polymerase isoforms

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FFEBS.13377

mRNA stabilization by poly(A) binding protein is independent of poly(A) and requires translation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FFEBS.13377

A turnover pathway for both stable and unstable mRNAs in yeast: evidence for a requirement for deadenylation

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FFEBS.13377

Two distinct destabilizing elements in the c-fos message trigger deadenylation as a first step in rapid mRNA decay

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FFEBS.13377

Targeting an mRNA for decapping: displacement of translation factors and association of the Lsm1p-7p complex on deadenylated yeast mRNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FFEBS.13377

The exosome: a conserved eukaryotic RNA processing complex containing multiple 3'-->5' exoribonucleases

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FFEBS.13377

Reconstitution, activities, and structure of the eukaryotic RNA exosome

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FFEBS.13377

Efficient RNA polyuridylation by noncanonical poly(A) polymerases

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FFEBS.13377

Degradation of histone mRNA requires oligouridylation followed by decapping and simultaneous degradation of the mRNA both 5' to 3' and 3' to 5'

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FFEBS.13377

Decapping is preceded by 3' uridylation in a novel pathway of bulk mRNA turnover

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FFEBS.13377

The human cytoplasmic RNA terminal U-transferase ZCCHC11 targets histone mRNAs for degradation

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FFEBS.13377

RNA-specific ribonucleotidyl transferases

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FFEBS.13377

21 January 2018

RNA uridylyltransferases

1 reference

https://api.crossref.org/works/10.1111%2FFEBS.13377

Major transcript of the frameshifted coxII gene from trypanosome mitochondria contains four nucleotides that are not encoded in the DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FFEBS.13377

A model for RNA editing in kinetoplastid mitochondria: "guide" RNA molecules transcribed from maxicircle DNA provide the edited information

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FFEBS.13377

CDE-1 affects chromosome segregation through uridylation of CSR-1-bound siRNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FFEBS.13377

Uridylation of mature miRNAs and siRNAs by the MUT68 nucleotidyltransferase promotes their degradation in Chlamydomonas.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FFEBS.13377

The Arabidopsis nucleotidyl transferase HESO1 uridylates unmethylated small RNAs to trigger their degradation

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FFEBS.13377

Hen1 is required for oocyte development and piRNA stability in zebrafish.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FFEBS.13377

Emerging roles of RNA modification: m(6)A and U-tail

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FFEBS.13377

RNA decay via 3' uridylation

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FFEBS.13377

HEN1 recognizes 21-24 nt small RNA duplexes and deposits a methyl group onto the 2' OH of the 3' terminal nucleotide

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FFEBS.13377

Methylation protects miRNAs and siRNAs from a 3'-end uridylation activity in Arabidopsis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FFEBS.13377

New ways to meet your (3') end oligouridylation as a step on the path to destruction

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FFEBS.13377

TAIL-seq: genome-wide determination of poly(A) tail length and 3' end modifications

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FFEBS.13377

A highly specific terminal uridylyl transferase modifies the 3'-end of U6 small nuclear RNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FFEBS.13377

Spliceosomal RNA U6 is remarkably conserved from yeast to mammals

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FFEBS.13377

Identification, cloning, and functional analysis of the human U6 snRNA-specific terminal uridylyl transferase

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FFEBS.13377

A stem/loop in U6 RNA defines a conformational switch required for pre-mRNA splicing

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FFEBS.13377

U snRNP assembly in yeast involves the La protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FFEBS.13377

Effect of 3' terminal adenylic acid residue on the uridylation of human small RNAs in vitro and in frog oocytes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FFEBS.13377

Trypanosome mitochondrial 3' terminal uridylyl transferase (TUTase): the key enzyme in U-insertion/deletion RNA editing

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FFEBS.13377

21 January 2018

A tale of two TUTases

1 reference

https://api.crossref.org/works/10.1111%2FFEBS.13377

Pentatricopeptide repeat proteins stimulate mRNA adenylation/uridylation to activate mitochondrial translation in trypanosomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FFEBS.13377

Guide RNAs in kinetoplastid mitochondria have a nonencoded 3′ oligo(U) tail involved in recognition of the preedited region

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FFEBS.13377

Stable PNPase RNAi silencing: its effect on the processing and adenylation of human mitochondrial RNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FFEBS.13377

Polyadenylation in Arabidopsis and Chlamydomonas organelles: the input of nucleotidyltransferases, poly(A) polymerases and polynucleotide phosphorylase.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FFEBS.13377

let-7 microRNAs in development, stem cells and cancer

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FFEBS.13377

Mono-uridylation of pre-microRNA as a key step in the biogenesis of group II let-7 microRNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FFEBS.13377

Single processing center models for human Dicer and bacterial RNase III

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FFEBS.13377

Lin28 mediates the terminal uridylation of let-7 precursor MicroRNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FFEBS.13377

TUT4 in concert with Lin28 suppresses microRNA biogenesis through pre-microRNA uridylation

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FFEBS.13377

Lin28-mediated control of let-7 microRNA expression by alternative TUTases Zcchc11 (TUT4) and Zcchc6 (TUT7).

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FFEBS.13377

Lin28 recruits the TUTase Zcchc11 to inhibit let-7 maturation in mouse embryonic stem cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FFEBS.13377

Single-molecule approach to immunoprecipitated protein complexes: insights into miRNA uridylation

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FFEBS.13377

Formation of the 3' end of histone mRNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FFEBS.13377

The stem-loop binding protein is required for efficient translation of histone mRNA in vivo and in vitro

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FFEBS.13377

Knockdown of SLBP results in nuclear retention of histone mRNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FFEBS.13377

Structure of histone mRNA stem-loop, human stem-loop binding protein, and 3'hExo ternary complex

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FFEBS.13377

mRNAs containing the histone 3' stem-loop are degraded primarily by decapping mediated by oligouridylation of the 3' end.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FFEBS.13377

Degradation of oligouridylated histone mRNAs: see UUUUU and goodbye

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FFEBS.13377

The C-terminal extension of Lsm4 interacts directly with the 3' end of the histone mRNP and is required for efficient histone mRNA degradation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FFEBS.13377

Eri1 degrades the stem-loop of oligouridylated histone mRNAs to induce replication-dependent decay.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FFEBS.13377

Deep sequencing shows multiple oligouridylations are required for 3' to 5' degradation of histone mRNAs on polyribosomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FFEBS.13377

Intracellular ribonucleases involved in transcript processing and decay: precision tools for RNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FFEBS.13377

Unravelling the dynamics of RNA degradation by ribonuclease II and its RNA-bound complex.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FFEBS.13377

The exosome contains domains with specific endoribonuclease, exoribonuclease and cytoplasmic mRNA decay activities.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FFEBS.13377

Crystal structure of an RNA-bound 11-subunit eukaryotic exosome complex

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FFEBS.13377

Conserved RNaseII domain protein functions in cytoplasmic mRNA decay and suppresses Arabidopsis decapping mutant phenotypes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FFEBS.13377

Germline mutations in DIS3L2 cause the Perlman syndrome of overgrowth and Wilms tumor susceptibility

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FFEBS.13377

Perlman syndrome: overgrowth, Wilms tumor predisposition and DIS3L2.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FFEBS.13377

Exonuclease-mediated degradation of nascent RNA silences genes linked to severe malaria

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FFEBS.13377

CED-3 caspase acts with miRNAs to regulate non-apoptotic gene expression dynamics for robust development in C. elegans

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FFEBS.13377

Apoptosis Triggers Specific, Rapid, and Global mRNA Decay with 3' Uridylated Intermediates Degraded by DIS3L2

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FFEBS.13377

3' Terminal oligo U-tract-mediated stimulation of decapping

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FFEBS.13377

Uridylation by TUT4 and TUT7 marks mRNA for degradation

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FFEBS.13377

Polyadenylation and beyond: emerging roles for noncanonical poly(A) polymerases

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FFEBS.13377

7 January 2021

Mechanism of Dis3l2 substrate recognition in the Lin28-let-7 pathway

1 reference

https://api.crossref.org/works/10.1111%2FFEBS.13377

7 January 2021

Formation of 2',3'-cyclic phosphates at the 3' end of human U6 small nuclear RNA in vitro. Identification of 2',3'-cyclic phosphates at the 3' ends of human signal recognition particle and mitochondrial RNA processing RNAs

1 reference

https://api.crossref.org/works/10.1111%2FFEBS.13377

7 January 2021

Molecular biology. A tail tale for U

1 reference

https://api.crossref.org/works/10.1111%2FFEBS.13377

7 January 2021

Identifiers

DOI

10.1111/FEBS.13377

1 reference

Consolidated OpenCitations Corpus – April 2017

1 reference

Consolidated OpenCitations Corpus – April 2017

PubMed publication ID

26183531

1 reference

Consolidated OpenCitations Corpus – April 2017