Hypothesis: Artifacts, Including Spurious Chimeric RNAs with a Short Homologous Sequence, Caused by Consecutive Reverse Transcriptions and Endogenous Random Primers (Q26820767)

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English	Hypothesis: Artifacts, Including Spurious Chimeric RNAs with a Short Homologous Sequence, Caused by Consecutive Reverse Transcriptions and Endogenous Random Primers	scientific article

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scholarly article

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Europe PubMed Central

Hypothesis: Artifacts, Including Spurious Chimeric RNAs with a Short Homologous Sequence, Caused by Consecutive Reverse Transcriptions and Endogenous Random Primers (English)

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author name string

Zhiyu Peng

1

1 reference

Chengfu Yuan

2

1 reference

Lucas Zellmer

3

1 reference

Siqi Liu

4

1 reference

Ningzhi Xu

5

1 reference

D. Joshua Liao

6

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language of work or name

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publication date

2015

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Journal of Cancer

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6

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6

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555-67

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ENCODE Project Writes Eulogy for Junk DNA

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4439942

28 September 2017

Characterization of TMPRSS2:ETV5 and SLC45A3:ETV5 gene fusions in prostate cancer.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4439942

28 September 2017

Myc dynamically and preferentially relocates to a transcription factory occupied by Igh

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4439942

28 September 2017

Potential pitfalls in the accuracy of analysis of natural sense-antisense RNA pairs by reverse transcription-PCR

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4439942

28 September 2017

The impact of translocations and gene fusions on cancer causation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4439942

28 September 2017

Complementary intron sequence motifs associated with human exon repetition: a role for intragenic, inter-transcript interactions in gene expression

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4439942

28 September 2017

Evolution and expression of chimeric POTE-actin genes in the human genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4439942

28 September 2017

Myc translocations in B cell and plasma cell neoplasms

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4439942

28 September 2017

Association of Ig/BCL6 translocations with germinal center B lymphocytes in human lymphoid tissues: implications for malignant transformation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4439942

28 September 2017

Template switching within exons 3 and 4 of KV11.1 (HERG) gives rise to a 5' truncated cDNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4439942

28 September 2017

Reverse transcriptase template switching and false alternative transcripts.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4439942

28 September 2017

Alternative trans-splicing: a novel mode of pre-mRNA processing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4439942

28 September 2017

Genomic organization of the mouse Msh4 gene producing bicistronic, chimeric and antisense mRNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4439942

28 September 2017

Trans-splicing of the mod(mdg4) complex locus is conserved between the distantly related species Drosophila melanogaster and D. virilis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4439942

28 September 2017

Exon repetition: a major pathway for processing mRNA of some genes is allele-specific

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4439942

28 September 2017

Properties of the reverse transcription reaction in mRNA quantification

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4439942

28 September 2017

Amplification of RNA transcripts using terminal continuation.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4439942

28 September 2017

Origins of chromosome translocations in childhood leukaemia

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4439942

28 September 2017

Lymphoma- and leukemia-associated chromosomal translocations in healthy individuals

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4439942

28 September 2017

Chromosome translocations and covert leukemic clones are generated during normal fetal development

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4439942

28 September 2017

Natural trans-spliced mRNAs are generated from the human estrogen receptor-alpha (hER alpha) gene

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4439942

28 September 2017

Intergenic mRNAs. Minor gene products or tools of diversity?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4439942

28 September 2017

Universal TA cloning.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4439942

28 September 2017

Fluorescence-based method for measuring and determining the mechanisms of recombination in quantitative PCR.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4439942

28 September 2017

Evaluation of PCR-generated chimeras, mutations, and heteroduplexes with 16S rRNA gene-based cloning

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4439942

28 September 2017

Characterization of acute promyelocytic leukemia cases lacking the classic t(15;17): results of the European Working Party. Groupe Français de Cytogénétique Hématologique, Groupe de Français d'Hematologie Cellulaire, UK Cancer Cytogenetics [...]

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4439942

28 September 2017

Cloning and characterization of a 77-kDa oestrogen receptor isolated from a human breast cancer cell line

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4439942

28 September 2017

A novel 80 kDa human estrogen receptor containing a duplication of exons 6 and 7

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4439942

28 September 2017

tRNAs as primer of reverse transcriptases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4439942

28 September 2017

RT-PCR: 'background priming' during reverse transcription.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4439942

28 September 2017

Fidelity of two retroviral reverse transcriptases during DNA-dependent DNA synthesis in vitro

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4439942

28 September 2017

Chimeric cDNA clones: a novel PCR artifact

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4439942

28 September 2017

Local and global factors affecting RNA sequencing analysis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4439942

31 May 2018

Characterization of specific cDNA background synthesis introduced by reverse transcription in RT-PCR assays

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4439942

31 May 2018

Regulation of antisense RNA expression during cardiac MHC gene switching in response to pressure overload

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4439942

31 May 2018

Two different reactions involved in the primer/template-independent polymerization of dATP and dTTP by Taq DNA polymerase.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4439942

31 May 2018

Second-strand cDNA synthesis: mRNA fragments as primers

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4439942

31 May 2018

DNA damage promotes jumping between templates during enzymatic amplification

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4439942

31 May 2018

Comprehensive analysis of BCR/ABL variants in chronic myeloid leukemia patients using multiplex RT-PCR.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4439942

28 November 2018

Molecular biology: RNA discrimination

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4439942

28 November 2018

Looking ultra deep: Short identical sequences and transcriptional slippage

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4439942

28 November 2018

Split introns in the genome of Giardia intestinalis are excised by spliceosome-mediated trans-splicing.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4439942

28 November 2018

Fusion genes in cord blood.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4439942

28 November 2018

ETV6/RUNX1 (TEL/AML1) is a frequent prenatal first hit in childhood leukemia.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4439942

28 November 2018

Prevalence of t(12;21)[ETV6-RUNX1]-positive cells in healthy neonates.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4439942

28 November 2018

Inference for the initial stage of domain shuffling: tracing the evolutionary fate of the PIPSL retrogene in hominoids.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4439942

28 November 2018

Short homologous sequences are strongly associated with the generation of chimeric RNAs in eukaryotes.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4439942

28 November 2018

The molecular anatomy of the FIP1L1-PDGFRA fusion gene.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4439942

28 November 2018

A bicistronic CYCLIN D1-TROP2 mRNA chimera demonstrates a novel oncogenic mechanism in human cancer.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4439942

28 November 2018

Quantitative real-time reverse-transcription polymerase chain reaction for diagnosis of BCR-ABL positive leukemias and molecular monitoring following allogeneic stem cell transplantation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4439942

28 November 2018

RNA amplification in brain tissues.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4439942

28 November 2018

Template switching generated during reverse transcription?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4439942

28 November 2018

Protein encoding by both DNA strands.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4439942

28 November 2018

Hybridization-AT-tailing (HybrAT) method for sensitive and strand-specific detection of DNA and RNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4439942

28 November 2018

Proximity of chromosomal loci that participate in radiation-induced rearrangements in human cells

1 reference

https://pubmed.ncbi.nlm.nih.gov/26000048

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Immunoglobulin/Myc recombinations in murine Peyer's patch follicles

1 reference

https://pubmed.ncbi.nlm.nih.gov/26000048

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

DNase I activity retained after heat inactivation in standard buffer

1 reference

https://pubmed.ncbi.nlm.nih.gov/26000048

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Reverse transcriptase template switching during reverse transcriptase-polymerase chain reaction: artificial generation of deletions in ribonucleotide reductase mRNA

1 reference

https://pubmed.ncbi.nlm.nih.gov/26000048

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

PML/RAR-alpha fusion transcript and polyploidy in acute promyelocytic leukemia without t(15;17)

1 reference

https://pubmed.ncbi.nlm.nih.gov/26000048

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

False positivity of ETV6/RUNX1 detected by FISH in healthy newborns and adults

1 reference

https://pubmed.ncbi.nlm.nih.gov/26000048

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Investigation of the origin of variant, truncated estrogen receptor-like mRNAs identified in some human breast cancer biopsy samples

1 reference

https://pubmed.ncbi.nlm.nih.gov/26000048

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Second-strand cDNA synthesis: classical method

1 reference

https://pubmed.ncbi.nlm.nih.gov/26000048

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Detection of major bcr-abl gene expression at a very low level in blood cells of some healthy individuals

1 reference

https://pubmed.ncbi.nlm.nih.gov/26000048

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Primer/template-independent synthesis of poly d(A-T) by Taq polymerase

1 reference

https://pubmed.ncbi.nlm.nih.gov/26000048

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Transcriptional readthrough of Hox genes Ubx and Antp and their divergent post-transcriptional control during crustacean evolution

1 reference

https://pubmed.ncbi.nlm.nih.gov/26000048

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Presenting ENCODE

1 reference

https://pubmed.ncbi.nlm.nih.gov/26000048

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Denaturants or cosolvents improve the specificity of PCR amplification of a G + C-rich DNA using genetically engineered DNA polymerases

1 reference

https://pubmed.ncbi.nlm.nih.gov/26000048

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

RNAse A treatment of Taq and Tth DNA polymerases eliminates primer/template-independent poly(dA-dT) synthesis

1 reference

https://pubmed.ncbi.nlm.nih.gov/26000048

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

DNA-directed DNA Polymerase Activity in Oncogenic RNA Viruses

1 reference

https://pubmed.ncbi.nlm.nih.gov/26000048

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Polyploidy in acute promyelocytic leukemia without the 15:17 translocation

1 reference

https://pubmed.ncbi.nlm.nih.gov/26000048

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.7150/JCA.11997

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

PMC publication ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

PubMed publication ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

ResearchGate publication ID

0 references

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