A survey of carbon fixation pathways through a quantitative lens (Q26859258)

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19 January 2020

title

A survey of carbon fixation pathways through a quantitative lens (English)

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19 January 2020

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1

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19 January 2020

Ron Milo

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3

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19 January 2020

author name string

Elad Noor

series ordinal

2

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19 January 2020

language of work or name

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26 December 2011

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Journal of Experimental Botany

19 January 2020

published in

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19 January 2020

volume

63

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19 January 2020

issue

6

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19 January 2020

page(s)

2325-2342

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Glycine reductase mechanism

19 January 2020

cites work

1 reference

https://api.crossref.org/works/10.1093%2FJXB%2FERR417

The Genome Sequence of the Metal-Mobilizing, Extremely Thermoacidophilic Archaeon Metallosphaera sedula Provides Insights into Bioleaching-Associated Metabolism

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJXB%2FERR417

Hydrophobicity and charge shape cellular metabolite concentrations

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJXB%2FERR417

Design and analysis of synthetic carbon fixation pathways

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJXB%2FERR417

The moderately efficient enzyme: evolutionary and physicochemical trends shaping enzyme parameters

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJXB%2FERR417

Photorespiration: players, partners and origin

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJXB%2FERR417

Relationship between thermodynamic driving force and one-way fluxes in reversible processes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJXB%2FERR417

Absolute metabolite concentrations and implied enzyme active site occupancy in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJXB%2FERR417

Ecological aspects of the distribution of different autotrophic CO2 fixation pathways

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJXB%2FERR417

A 3-hydroxypropionate/4-hydroxybutyrate autotrophic carbon dioxide assimilation pathway in Archaea

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJXB%2FERR417

Autotrophic carbon fixation in archaea.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJXB%2FERR417

Study of the distribution of autotrophic CO2 fixation cycles in Crenarchaeota.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJXB%2FERR417

Bacterial Na+-translocating ferredoxin:NAD+ oxidoreductase

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJXB%2FERR417

Computation of metabolic fluxes and efficiencies for biological carbon dioxide fixation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJXB%2FERR417

A reverse KREBS cycle in photosynthesis: consensus at last

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJXB%2FERR417

Abundance of reverse tricarboxylic acid cycle genes in free-living microorganisms at deep-sea hydrothermal vents

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJXB%2FERR417

Proteome and transcriptional analysis of ethanol-grown Sulfolobus solfataricus P2 reveals ADH2, a potential alcohol dehydrogenase

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJXB%2FERR417

The phylogeny of the genus Clostridium: proposal of five new genera and eleven new species combinations.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJXB%2FERR417

Life close to the thermodynamic limit: how methanogenic archaea conserve energy

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJXB%2FERR417

Unusual coenzymes of methanogenesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJXB%2FERR417

21 January 2018

Old acetogens, new light

1 reference

https://api.crossref.org/works/10.1093%2FJXB%2FERR417

The plant-like C2 glycolate cycle and the bacterial-like glycerate pathway cooperate in phosphoglycolate metabolism in cyanobacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJXB%2FERR417

First evidence for existence of an uphill electron transfer through the bc(1) and NADH-Q oxidoreductase complexes of the acidophilic obligate chemolithotrophic ferrous ion-oxidizing bacterium Thiobacillus ferrooxidans

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJXB%2FERR417

Formaldehyde activation factor, tetrahydromethanopterin, a coenzyme of methanogenesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJXB%2FERR417

Labeling and enzyme studies of the central carbon metabolism in Metallosphaera sedula

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJXB%2FERR417

A new ferredoxin-dependent carbon reduction cycle in a photosynthetic bacterium

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJXB%2FERR417

Metabolic control analysis: a survey of its theoretical and experimental development

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJXB%2FERR417

Clostridium sticklandii, a specialist in amino acid degradation:revisiting its metabolism through its genome sequence

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJXB%2FERR417

Properties of succinyl-coenzyme A:L-malate coenzyme A transferase and its role in the autotrophic 3-hydroxypropionate cycle of Chloroflexus aurantiacus

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJXB%2FERR417

Alternative pathways of carbon dioxide fixation: insights into the early evolution of life?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJXB%2FERR417

CO2 concentrating mechanisms in algae: mechanisms, environmental modulation, and evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJXB%2FERR417

Purification and properties of malyl-coenzyme A lyase from Pseudomonas AM1.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJXB%2FERR417

The reaction center of green sulfur bacteria(1).

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJXB%2FERR417

Extremely Thermophilic Routes to Microbial Electrofuels

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJXB%2FERR417

Characterization of 2-ketoisovalerate ferredoxin oxidoreductase, a new and reversible coenzyme A-dependent enzyme involved in peptide fermentation by hyperthermophilic archaea

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJXB%2FERR417

Characterization of the carboxysomal carbonic anhydrase CsoSCA from Halothiobacillus neapolitanus

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJXB%2FERR417

Genome-scale thermodynamic analysis of Escherichia coli metabolism

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJXB%2FERR417

L-Malyl-coenzyme A lyase/beta-methylmalyl-coenzyme A lyase from Chloroflexus aurantiacus, a bifunctional enzyme involved in autotrophic CO(2) fixation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJXB%2FERR417

A bicyclic autotrophic CO2 fixation pathway in Chloroflexus aurantiacus

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJXB%2FERR417

A dicarboxylate/4-hydroxybutyrate autotrophic carbon assimilation cycle in the hyperthermophilic Archaeum Ignicoccus hospitalis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJXB%2FERR417

Autotrophic CO2 fixation via the reductive tricarboxylic acid cycle in different lineages within the phylum Aquificae: evidence for two ways of citrate cleavage.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJXB%2FERR417

Beyond the Calvin cycle: autotrophic carbon fixation in the ocean

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJXB%2FERR417

Iron-sulphur clusters and the problem with oxygen

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJXB%2FERR417

Group contribution method for thermodynamic analysis of complex metabolic networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJXB%2FERR417

Differential accumulation of form I RubisCO in Rhodopseudomonas palustris CGA010 under Photoheterotrophic growth conditions with reduced carbon sources.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJXB%2FERR417

KEGG: kyoto encyclopedia of genes and genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJXB%2FERR417

Chloroplastic photorespiratory bypass increases photosynthesis and biomass production in Arabidopsis thaliana

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJXB%2FERR417

The catalytic mechanism of 2-oxoacid:ferredoxin oxidoreductases from Halobacterium halobium. One-electron transfer at two distinct steps of the catalytic cycle.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJXB%2FERR417

The glycine cleavage system: Composition, reaction mechanism, and physiological significance

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJXB%2FERR417

Modeling the electron transport chain of purple non-sulfur bacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJXB%2FERR417

Insights into plant metabolic networks from steady-state metabolic flux analysis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJXB%2FERR417

Metabolic flux analysis in plants: from intelligent design to rational engineering.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJXB%2FERR417

A life with acetogens, thermophiles, and cellulolytic anaerobes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJXB%2FERR417

Can improvement in photosynthesis increase crop yields?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJXB%2FERR417

Tetrahydrofolate and tetrahydromethanopterin compared: functionally distinct carriers in C1 metabolism

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJXB%2FERR417

Physiology and phylogeny of green sulfur bacteria forming a monospecific phototrophic assemblage at a depth of 100 meters in the Black Sea.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJXB%2FERR417

Crystal structure of 4-hydroxybutyryl-CoA dehydratase: radical catalysis involving a [4Fe-4S] cluster and flavin

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJXB%2FERR417

L-malyl-coenzyme A/beta-methylmalyl-coenzyme A lyase is involved in acetate assimilation of the isocitrate lyase-negative bacterium Rhodobacter capsulatus

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJXB%2FERR417

The biological deep sea hydrothermal vent as a model to study carbon dioxide capturing enzymes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJXB%2FERR417

Mathematical modeling of plant metabolic pathways

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJXB%2FERR417

Synthesis of (13)C-labeled gamma-hydroxybutyrates for EPR studies with 4-hydroxybutyryl-CoA dehydratase

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJXB%2FERR417

Metabolic engineering towards the enhancement of photosynthesis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJXB%2FERR417

Isolation and analysis of the gene encoding the pyruvate-ferredoxin oxidoreductase of Desulfovibrio africanus, production of the recombinant enzyme in Escherichia coli, and effect of carboxy-terminal deletions on its stability

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJXB%2FERR417

A genomic analysis of the archaeal system Ignicoccus hospitalis-Nanoarchaeum equitans

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJXB%2FERR417

Ammonia oxidation coupled to CO2 fixation by archaea and bacteria in an agricultural soil

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJXB%2FERR417

Advances in understanding the cyanobacterial CO2-concentrating-mechanism (CCM): functional components, Ci transporters, diversity, genetic regulation and prospects for engineering into plants

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJXB%2FERR417

Stoichiometric network theory for nonequilibrium biochemical systems

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJXB%2FERR417

Pyruvate ferredoxin oxidoreductase and its radical intermediate

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJXB%2FERR417

Enzymology of the wood-Ljungdahl pathway of acetogenesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJXB%2FERR417

Acetogenesis and the Wood-Ljungdahl pathway of CO(2) fixation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJXB%2FERR417

The Calvin cycle revisited

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJXB%2FERR417

Transgenic approaches to manipulate the environmental responses of the C3 carbon fixation cycle

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJXB%2FERR417

Identification of missing genes and enzymes for autotrophic carbon fixation in crenarchaeota

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJXB%2FERR417

BIOCHEMISTRY: How Enzymes Work

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJXB%2FERR417

Variation in the k(cat) of Rubisco in C(3) and C(4) plants and some implications for photosynthetic performance at high and low temperature

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJXB%2FERR417

Comparative studies on physiology and taxonomy of obligately purinolytic clostridia

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJXB%2FERR417

Understanding flux in plant metabolic networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJXB%2FERR417

Stereochemistry of hydrogen removal from the 'unactivated' C-3 position of 4-hydroxybutyryl-CoA catalysed by 4-hydroxybutyryl-CoA dehydratase

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJXB%2FERR417

Cloning, characterization and expression of a gene encoding dihydroxyacetone synthase in Mycobacterium sp. strain JC1 DSM 3803.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJXB%2FERR417

Emerging principles of inorganic nitrogen metabolism in Paracoccus denitrificans and related bacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJXB%2FERR417

Protein engineering of formate dehydrogenase.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJXB%2FERR417

Nitrosopumilus maritimus genome reveals unique mechanisms for nitrification and autotrophy in globally distributed marine crenarchaea

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJXB%2FERR417

Reductive pentose phosphate-independent CO2 fixation in Rhodobacter sphaeroides and evidence that ribulose bisphosphate carboxylase/oxygenase activity serves to maintain the redox balance of the cell

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJXB%2FERR417

Chemical constraints governing the origin of metabolism: the thermodynamic landscape of carbon group transformations under mild aqueous conditions

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJXB%2FERR417

Characterization of two different 2-oxoglutarate:ferredoxin oxidoreductases from Hydrogenobacter thermophilus TK-6.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJXB%2FERR417

Role of two 2-oxoglutarate:ferredoxin oxidoreductases in Hydrogenobacter thermophilus under aerobic and anaerobic conditions

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJXB%2FERR417

Protein-based organelles in bacteria: carboxysomes and related microcompartments

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJXB%2FERR417

Rubredoxin from the green sulfur bacterium Chlorobium tepidum functions as an electron acceptor for pyruvate ferredoxin oxidoreductase

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJXB%2FERR417

Mapping photoautotrophic metabolism with isotopically nonstationary (13)C flux analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJXB%2FERR417

Activation of glycine decarboxylase in pea leaf mitochondria by ATP.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJXB%2FERR417

21 January 2018

Identifiers

DOI

10.1093/JXB/ERR417

2 references

Consolidated OpenCitations Corpus – April 2017

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22200662%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

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Consolidated OpenCitations Corpus – April 2017

2 references

Consolidated OpenCitations Corpus – April 2017