Composition and function of P bodies in Arabidopsis thaliana (Q26864862)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24860588%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

title

Composition and function of P bodies in Arabidopsis thaliana (English)

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24860588%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

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Luis D Maldonado-Bonilla

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24860588%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

author name string

Luis D. Maldonado-Bonilla

series ordinal

1

1 reference

language of work or name

1 reference

14 May 2014

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24860588%20AND%20SRC:MED&resulttype=core&format=json

Frontiers in Plant Science

19 March 2020

published in

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24860588%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

volume

5

2 references

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19 March 2020

page(s)

201

2 references

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The C-terminal domains of human TNRC6A, TNRC6B, and TNRC6C silence bound transcripts independently of Argonaute proteins

19 March 2020

cites work

1 reference

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Multiple processing body factors and the ARE binding protein TTP activate mRNA decapping

21 March 2017

1 reference

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Stress granules and processing bodies are dynamically linked sites of mRNP remodeling

21 March 2017

1 reference

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MicroRNA-dependent localization of targeted mRNAs to mammalian P-bodies

21 March 2017

1 reference

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A role for eIF4E and eIF4E-transporter in targeting mRNPs to mammalian processing bodies

21 March 2017

1 reference

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The GW182 protein colocalizes with mRNA degradation associated proteins hDcp1 and hLSm4 in cytoplasmic GW bodies

21 March 2017

1 reference

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Cytoplasmic heat shock granules are formed from precursor particles and are associated with a specific set of mRNAs

21 March 2017

1 reference

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Crystal structure of Dcp1p and its functional implications in mRNA decapping

21 March 2017

1 reference

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A role for Q/N-rich aggregation-prone regions in P-body localization.

21 March 2017

1 reference

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Targeting of aberrant mRNAs to cytoplasmic processing bodies

21 March 2017

1 reference

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Decapping and Decay of Messenger RNA Occur in Cytoplasmic Processing Bodies

21 March 2017

1 reference

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Yeast Sm-like proteins function in mRNA decapping and decay

21 March 2017

1 reference

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TTP and BRF proteins nucleate processing body formation to silence mRNAs with AU-rich elements

21 March 2017

1 reference

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Recruitment and activation of mRNA decay enzymes by two ARE-mediated decay activation domains in the proteins TTP and BRF-1

21 March 2017

1 reference

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21 March 2017

On track with P-bodies

2 references

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21 March 2017

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Movement of eukaryotic mRNAs between polysomes and cytoplasmic processing bodies

7 April 2017

1 reference

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A mouse cytoplasmic exoribonuclease (mXRN1p) with preference for G4 tetraplex substrates

21 March 2017

1 reference

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mRNA decay proteins are targeted to poly(A)+ RNA and dsRNA-containing cytoplasmic foci that resemble P-bodies in Entamoeba histolytica

21 March 2017

1 reference

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Deadenylation is prerequisite for P-body formation and mRNA decay in mammalian cells

21 March 2017

1 reference

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Degradation of the antiviral component ARGONAUTE1 by the autophagy pathway

21 March 2017

1 reference

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Mining Functional Elements in Messenger RNAs: Overview, Challenges, and Perspectives

21 March 2017

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Identification of novel conserved peptide uORF homology groups in Arabidopsis and rice reveals ancient eukaryotic origin of select groups and preferential association with transcription factor-encoding genes

21 March 2017

1 reference

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P bodies and the control of mRNA translation and degradation

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4030149

The many pathways of RNA degradation

7 April 2017

1 reference

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Stress granules: the Tao of RNA triage

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4030149

General translational repression by activators of mRNA decapping

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4030149

Processing bodies require RNA for assembly and contain nontranslating mRNAs

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4030149

The Arabidopsis thaliana tandem zinc finger 1 (AtTZF1) protein in RNA binding and decay

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4030149

MicroRNAs inhibit the translation of target mRNAs on the endoplasmic reticulum in Arabidopsis

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4030149

Arabidopsis thaliana LSM proteins function in mRNA splicing and degradation.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4030149

Cytoplasmic and nuclear quality control and turnover of single-stranded RNA modulate post-transcriptional gene silencing in plants

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4030149

The Arabidopsis leaf provascular cell transcriptome is enriched in genes with roles in vein patterning

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4030149

Interactome analysis reveals versatile functions of Arabidopsis COLD SHOCK DOMAIN PROTEIN 3 in RNA processing within the nucleus and cytoplasm

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4030149

OsTZF1, a CCCH-tandem zinc finger protein, confers delayed senescence and stress tolerance in rice by regulating stress-related genes

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4030149

RNA decay and RNA silencing in plants: competition or collaboration?

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4030149

Arabidopsis zinc finger proteins AtC3H49/AtTZF3 and AtC3H20/AtTZF2 are involved in ABA and JA responses

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4030149

Aberrant growth and lethality of Arabidopsis deficient in nonsense-mediated RNA decay factors is caused by autoimmune-like response

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4030149

Regulation of mRNA decapping

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4030149

The cAMP-dependent protein kinase signaling pathway is a key regulator of P body foci formation

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4030149

Stress tolerance to stress escape in plants: role of the OXS2 zinc-finger transcription factor family

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4030149

Unraveling regulation and new components of human P-bodies through a protein interaction framework and experimental validation

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4030149

P-body components, Dhh1 and Pat1, are involved in tRNA nuclear-cytoplasmic dynamics

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4030149

Myosin Va is required for P body but not stress granule formation

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4030149

Evidence that XRN4, an Arabidopsis homolog of exoribonuclease XRN1, preferentially impacts transcripts with certain sequences or in particular functional categories

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4030149

The Arabidopsis tandem zinc finger protein AtTZF1 affects ABA- and GA-mediated growth, stress and gene expression responses

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4030149

Defects in the secretory pathway and high Ca2+ induce multiple P-bodies

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4030149

Genome-wide computational identification of WG/GW Argonaute-binding proteins in Arabidopsis

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4030149

AtTZF gene family localizes to cytoplasmic foci.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4030149

Unravelling the ultrastructure of stress granules and associated P-bodies in human cells.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4030149

Widespread translational inhibition by plant miRNAs and siRNAs

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4030149

Inter-kingdom conservation of mechanism of nonsense-mediated mRNA decay

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4030149

Identification of PCBP2, a facilitator of IRES-mediated translation, as a novel constituent of stress granules and processing bodies

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4030149

Components of the Arabidopsis mRNA decapping complex are required for early seedling development

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4030149

Accumulation of polyadenylated mRNA, Pab1p, eIF4E, and eIF4G with P-bodies in Saccharomyces cerevisiae

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4030149

Arabidopsis DCP2, DCP1, and VARICOSE form a decapping complex required for postembryonic development

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4030149

Expression profiling and mutant analysis reveals complex regulatory networks involved in Arabidopsis response to Botrytis infection

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4030149

ETHYLENE-INSENSITIVE5 encodes a 5'-->3' exoribonuclease required for regulation of the EIN3-targeting F-box proteins EBF1/2.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4030149

Genomewide comparative analysis of alternative splicing in plants

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4030149

PEPPER, a novel K-homology domain gene, regulates vegetative and gynoecium development in Arabidopsis

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4030149

Ge-1 is a central component of the mammalian cytoplasmic mRNA processing body

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4030149

Arabidopsis ARGONAUTE1 is an RNA Slicer that selectively recruits microRNAs and short interfering RNAs

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4030149

mRNA deadenylation by PARN is essential for embryogenesis in higher plants

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4030149

The mRNA cap-binding protein eIF4E in post-transcriptional gene expression

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4030149

Genome analysis: RNA recognition motif (RRM) and K homology (KH) domain RNA-binding proteins from the flowering plant Arabidopsis thaliana

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4030149

Modulation of abscisic acid signal transduction and biosynthesis by an Sm-like protein in Arabidopsis.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4030149

Dehydration stress activates Arabidopsis MPK6 to signal DCP1 phosphorylation

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4030149

SPT6L encoding a putative WG/GW-repeat protein regulates apical-basal polarity of embryo in Arabidopsis

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4030149

P-body formation is a consequence, not the cause, of RNA-mediated gene silencing

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4030149

UPF1 is required for nonsense-mediated mRNA decay (NMD) and RNAi in Arabidopsis

31 May 2018

1 reference

https://api.crossref.org/works/10.3389%2FFPLS.2014.00201

The Arabidopsis tandem CCCH zinc finger proteins AtTZF4, 5 and 6 are involved in light-, abscisic acid- and gibberellic acid-mediated regulation of seed germination

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFPLS.2014.00201

A link between RNA metabolism and silencing affecting Arabidopsis development.

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFPLS.2014.00201

Evidence of P-body-like structures in Trypanosoma cruzi.

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFPLS.2014.00201

Physiological characterization of the Arabidopsis thaliana oxidation-related zinc finger 1, a plasma membrane protein involved in oxidative stress

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFPLS.2014.00201

Nonsense-mediated mRNA decay factors, UPF1 and UPF3, contribute to plant defense.

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFPLS.2014.00201

SOMNUS, a CCCH-type zinc finger protein in Arabidopsis, negatively regulates light-dependent seed germination downstream of PIL5.

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFPLS.2014.00201

Biochemical evidence for translational repression by Arabidopsis microRNAs.

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFPLS.2014.00201

The Arabidopsis homologs of CCR4-associated factor 1 show mRNA deadenylation activity and play a role in plant defence responses

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFPLS.2014.00201

The Arabidopsis tandem zinc finger 9 protein binds RNA and mediates pathogen-associated molecular pattern-triggered immune responses

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFPLS.2014.00201

The late steps of plant nonsense-mediated mRNA decay.

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFPLS.2014.00201

Fertile hypomorphic ARGONAUTE (ago1) mutants impaired in post-transcriptional gene silencing and virus resistance

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFPLS.2014.00201

Plant upstream ORFs can trigger nonsense-mediated mRNA decay in a size-dependent manner.

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFPLS.2014.00201

The Arabidopsis tandem zinc finger protein AtTZF1 traffics between the nucleus and cytoplasmic foci and binds both DNA and RNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFPLS.2014.00201

Polypyrimidine tract-binding protein homologues from Arabidopsis underlie regulatory circuits based on alternative splicing and downstream control.

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFPLS.2014.00201

Processing-body movement in Arabidopsis depends on an interaction between myosins and DECAPPING PROTEIN1.

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFPLS.2014.00201

The CCCH-type zinc finger proteins AtSZF1 and AtSZF2 regulate salt stress responses in Arabidopsis.

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFPLS.2014.00201

Arabidopsis deadenylases AtCAF1a and AtCAF1b play overlapping and distinct roles in mediating environmental stress responses.

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFPLS.2014.00201

Plant stress granules and mRNA processing bodies are distinct from heat stress granules

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFPLS.2014.00201

Arabidopsis decapping 5 is required for mRNA decapping, P-body formation, and translational repression during postembryonic development.

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFPLS.2014.00201

Arabidopsis UPF1 RNA helicase for nonsense-mediated mRNA decay is involved in seed size control and is essential for growth

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFPLS.2014.00201

Identification of PatL1, a human homolog to yeast P body component Pat1

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFPLS.2014.00201

LSM proteins provide accurate splicing and decay of selected transcripts to ensure normal Arabidopsis development

21 January 2018

1 reference

12 December 2020

The exoribonuclease XRN4 is a component of the ethylene response pathway in Arabidopsis

1 reference

12 December 2020

The role of decapping proteins in the miRNA accumulation in Arabidopsis thaliana

1 reference

12 December 2020

PEI1, an embryo-specific zinc finger protein gene required for heart-stage embryo formation in Arabidopsis

1 reference

12 December 2020

Characterization of Arabidopsis decapping proteins AtDCP1 and AtDCP2, which are essential for post-embryonic development

1 reference

12 December 2020

Identifiers

DOI

10.3389/FPLS.2014.00201

2 references

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

4452980

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24860588%20AND%20SRC:MED&resulttype=core&format=json

OpenCitations bibliographic resource ID

19 March 2020

4452980

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24860588%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

PubMed publication ID

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24860588%20AND%20SRC:MED&resulttype=core&format=json