Promoter clearance by RNA polymerase II (Q27012720)

Crossref

language of work or name

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January 2013

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Biochimica et Biophysica Acta

published in

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volume

1829

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issue

1

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page(s)

63-8

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Functional association of Gdown1 with RNA polymerase II poised on human genes

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Direct detection of abortive RNA transcripts in vivo

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Initial transcription by RNA polymerase proceeds through a DNA-scrunching mechanism

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Three transitions in the RNA polymerase II transcription complex during initiation

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21 March 2017

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Initiation Complex Structure and Promoter Proofreading

21 March 2017

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Molecular architecture of the human Mediator-RNA polymerase II-TFIIF assembly

21 March 2017

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Architecture of the RNA polymerase-Spt4/5 complex and basis of universal transcription processivity

21 March 2017

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Structure of an RNA Polymerase II-TFIIB Complex and the Transcription Initiation Mechanism

21 March 2017

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RNA polymerase II-TFIIB structure and mechanism of transcription initiation

21 March 2017

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Structural basis of transcription: separation of RNA from DNA by RNA polymerase II

21 March 2017

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Structural basis of transcription: an RNA polymerase II-TFIIB cocrystal at 4.5 Angstroms

21 March 2017

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Position of the general transcription factor TFIIF within the RNA polymerase II transcription preinitiation complex

21 March 2017

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Functions of Saccharomyces cerevisiae TFIIF during transcription start site utilization

21 March 2017

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Mechanism of ATP-dependent promoter melting by transcription factor IIH

21 March 2017

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CpG islands and the regulation of transcription

21 March 2017

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The human Mediator complex: a versatile, genome-wide regulator of transcription

21 March 2017

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Functional characterization of core promoter elements: DPE-specific transcription requires the protein kinase CK2 and the PC4 coactivator

21 March 2017

1 reference

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The general transcription factors of RNA polymerase II

21 March 2017

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Strong natural pausing by RNA polymerase II within 10 bases of transcription start may result in repeated slippage and reextension of the nascent RNA.

21 March 2017

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Promoter clearance by RNA polymerase II is an extended, multistep process strongly affected by sequence

21 March 2017

1 reference

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Reconstitution of the transcription factor TFIIH: assignment of functions for the three enzymatic subunits, XPB, XPD, and cdk7

21 March 2017

1 reference

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A role for TFIIH in controlling the activity of early RNA polymerase II elongation complexes

21 March 2017

1 reference

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Recycling of the general transcription factors during RNA polymerase II transcription

21 March 2017

1 reference

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The role of general initiation factors in transcription by RNA polymerase II

21 March 2017

1 reference

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Physiological concentrations of purines and pyrimidines

7 April 2017

1 reference

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Evidence that RNA polymerase II and not TFIIB is responsible for the difference in transcription initiation patterns between Saccharomyces cerevisiae and Schizosaccharomyces pombe

7 April 2017

1 reference

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Genome-wide structure and organization of eukaryotic pre-initiation complexes

28 September 2017

1 reference

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Inactivated RNA polymerase II open complexes can be reactivated with TFIIE.

28 September 2017

1 reference

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Architecture of the yeast RNA polymerase II open complex and regulation of activity by TFIIF

28 September 2017

1 reference

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Transcription factor TFIIF is not required for initiation by RNA polymerase II, but it is essential to stabilize transcription factor TFIIB in early elongation complexes

28 September 2017

1 reference

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The initiation factor TFE and the elongation factor Spt4/5 compete for the RNAP clamp during transcription initiation and elongation

28 September 2017

1 reference

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Direct tests of the energetic basis of abortive cycling in transcription

28 September 2017

1 reference

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Fixing the model for transcription: the DNA moves, not the polymerase

28 September 2017

1 reference

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Analysis of factor interactions with RNA polymerase II elongation complexes using a new electrophoretic mobility shift assay

28 September 2017

1 reference

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The RNA polymerase II core promoter - the gateway to transcription.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3529798

Control of the timing of promoter escape and RNA catalysis by the transcription factor IIb fingertip

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3529798

The positions of TFIIF and TFIIE in the RNA polymerase II transcription preinitiation complex.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3529798

Transcriptional and structural impact of TATA-initiation site spacing in mammalian core promoters

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3529798

Structure and mechanism of the RNA polymerase II transcription machinery

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3529798

The initiation-elongation transition: lateral mobility of RNA in RNA polymerase II complexes is greatly reduced at +8/+9 and absent by +23.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3529798

RNA polymerase: structural similarities between bacterial RNA polymerase and eukaryotic RNA polymerase II.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3529798

Mutations in XPB and XPD helicases found in xeroderma pigmentosum patients impair the transcription function of TFIIH.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3529798

Structural changes in the RNA polymerase II transcription complex during transition from initiation to elongation

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3529798

Functions of the N- and C-terminal domains of human RAP74 in transcriptional initiation, elongation, and recycling of RNA polymerase II

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3529798

Increased accommodation of nascent RNA in a product site on RNA polymerase II during arrest

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3529798

Dynamic interaction between a Drosophila transcription factor and RNA polymerase II.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3529798

Gene looping is conferred by activator-dependent interaction of transcription initiation and termination machineries

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3529798

TATA-binding protein and transcription factor IIB induce transcript slipping during early transcription by RNA polymerase II.

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3529798

Promoter escape by RNA polymerase II. A role for an ATP cofactor in suppression of arrest by polymerase at promoter-proximal sites

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3529798

Abortive initiation by RNA polymerase II in vitro at the adenovirus 2 major late promoter

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3529798

A stressed intermediate in the formation of stably initiated RNA chains at the Escherichia coli lac UV5 promoter.

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3529798

Transcription initiation by RNA polymerase II in vitro. Properties of preinitiation, initiation, and elongation complexes.

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3529798

Interaction of RNA polymerase with lacUV5 promoter DNA during mRNA initiation and elongation. Footprinting, methylation, and rifampicin-sensitivity changes accompanying transcription initiation.

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3529798

A transcription-independent role for TFIIB in gene looping.

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3529798

TFIIH XPB mutants suggest a unified bacterial-like mechanism for promoter opening but not escape

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3529798

In vitro studies of transcript initiation by Escherichia coli RNA polymerase. 1. RNA chain initiation, abortive initiation, and promoter escape at three bacteriophage promoters

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3529798

Dual roles for transcription factor IIF in promoter escape by RNA polymerase II.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3529798

Functional analysis of Drosophila factor 5 (TFIIF), a general transcription factor.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3529798

A Role for the TFIIH XPB DNA Helicase in Promoter Escape by RNA Polymerase II

28 November 2018

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12 December 2020

The role of the transcription bubble and TFIIB in promoter clearance by RNA polymerase II

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12 December 2020

Quantitative analysis of in vivo initiator selection by yeast RNA polymerase II supports a scanning model

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12 December 2020

RNA polymerase II transcription complexes may become arrested if the nascent RNA is shortened to less than 50 nucleotides

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12 December 2020

Promoter escape by RNA polymerase II. Downstream promoter DNA is required during multiple steps of early transcription

1 reference

12 December 2020

Cycling of ribonucleic acid polymerase to produce oligonucleotides during initiation in vitro at the lac UV5 promoter

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12 December 2020

Purification and characterization of ternary complexes containing accurately initiated RNA polymerase II and less than 20 nucleotides of RNA

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12 December 2020

A transcription reinitiation intermediate that is stabilized by activator

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12 December 2020

Factor-stimulated RNA polymerase II transcribes at physiological elongation rates on naked DNA but very poorly on chromatin templates

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12 December 2020

DNA melting on yeast RNA polymerase II promoters

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12 December 2020

Abortive Initiation and First Bond Formation at an Activated Adenovirus E4 Promoter

1 reference

12 December 2020

Translocation and transcriptional arrest during transcript elongation by RNA polymerase II

1 reference

12 December 2020

10.1016/J.BBAGRM.2012.08.010

Identifiers

DOI

1 reference

1 reference

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PubMed publication ID

22982364

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