Evolutionary conflicts between viruses and restriction factors shape immunity (Q27022032)

language of work or name

1 reference

October 2012

1 reference

Nature Reviews Immunology

1 October 2012

1 reference

22 August 2022

2 references

22 August 2022

12

1 reference

issue

10

1 reference

page(s)

687-95

1 reference

IFITM3 restricts the morbidity and mortality associated with influenza

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SAMHD1 restricts the replication of human immunodeficiency virus type 1 by depleting the intracellular pool of deoxynucleoside triphosphates

21 March 2017

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Evolutionary and functional analyses of the interaction between the myeloid restriction factor SAMHD1 and the lentiviral Vpx protein

21 March 2017

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21 March 2017

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Antiviral inhibition of enveloped virus release by tetherin/BST-2: action and counteraction

21 March 2017

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Vpx relieves inhibition of HIV-1 infection of macrophages mediated by the SAMHD1 protein

21 March 2017

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SAMHD1 is the dendritic- and myeloid-cell-specific HIV-1 restriction factor counteracted by Vpx

21 March 2017

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TRIM5 is an innate immune sensor for the retrovirus capsid lattice

21 March 2017

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Endogenous viral elements in animal genomes

21 March 2017

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Paleovirology--modern consequences of ancient viruses

21 March 2017

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Toward an AIDS vaccine: lessons from natural simian immunodeficiency virus infections of African nonhuman primate hosts

21 March 2017

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Mutations involved in Aicardi-Goutières syndrome implicate SAMHD1 as regulator of the innate immune response

21 March 2017

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A transitional endogenous lentivirus from the genome of a basal primate and implications for lentivirus evolution

21 March 2017

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Antiretroelement activity of APOBEC3H was lost twice in recent human evolution

21 March 2017

1 reference

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Trex1 prevents cell-intrinsic initiation of autoimmunity

21 March 2017

1 reference

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Independent evolution of an antiviral TRIMCyp in rhesus macaques

21 March 2017

1 reference

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Adaptive evolution and antiviral activity of the conserved mammalian cytidine deaminase APOBEC3H.

21 March 2017

1 reference

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Differential requirement for conserved tryptophans in human immunodeficiency virus type 1 Vif for the selective suppression of APOBEC3G and APOBEC3F.

21 March 2017

1 reference

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Natural variation in Vif: differential impact on APOBEC3G/3F and a potential role in HIV-1 diversification

21 March 2017

1 reference

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High rate of viral evolution associated with the emergence of carnivore parvovirus

21 March 2017

1 reference

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Ancient adaptive evolution of the primate antiviral DNA-editing enzyme APOBEC3G

21 March 2017

1 reference

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Large-scale identification and characterization of human genes that activate NF-kappaB and MAPK signaling pathways

21 March 2017

1 reference

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Evidence for balancing selection from nucleotide sequence analyses of human G6PD

21 March 2017

1 reference

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Rates of molecular evolution in RNA viruses: a quantitative phylogenetic analysis

21 March 2017

1 reference

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Historical perspective of foamy virus epidemiology and infection

21 March 2017

1 reference

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Parallel Germline Infiltration of a Lentivirus in Two Malagasy Lemurs

21 March 2017

1 reference

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Interferon-inducible antiviral effectors

21 March 2017

1 reference

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Induction of APOBEC3G Ubiquitination and Degradation by an HIV-1 Vif-Cul5-SCF Complex

21 March 2017

1 reference

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Recent and ongoing selection in the human genome

21 March 2017

1 reference

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Ancient co-speciation of simian foamy viruses and primates

21 March 2017

1 reference

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An endogenous foamy-like viral element in the coelacanth genome

21 March 2017

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The genetics of human adaptation: hard sweeps, soft sweeps, and polygenic adaptation

21 March 2017

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Evolution of a TRIM5-CypA splice isoform in old world monkeys

21 March 2017

1 reference

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Cytidine deamination of retroviral DNA by diverse APOBEC proteins

21 March 2017

1 reference

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HIV-1 accessory proteins--ensuring viral survival in a hostile environment

21 March 2017

1 reference

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Molecular signatures of natural selection

7 April 2017

1 reference

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Positive selection of primate TRIM5alpha identifies a critical species-specific retroviral restriction domain

7 April 2017

1 reference

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Cyclophilin A retrotransposition into TRIM5 explains owl monkey resistance to HIV-1

7 April 2017

1 reference

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Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3690816

The function and evolution of the restriction factor Viperin in primates was not driven by lentiviruses

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3690816

A cytoplasmic tail determinant in HIV-1 Vpu mediates targeting of tetherin for endosomal degradation and counteracts interferon-induced restriction.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3690816

A single nucleotide polymorphism in tetherin promotes retrovirus restriction in vivo

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3690816

In vivo and in vitro studies on the antiviral activities of viperin against influenza H1N1 virus infection

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3690816

The ability of primate lentiviruses to degrade the monocyte restriction factor SAMHD1 preceded the birth of the viral accessory protein Vpx.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3690816

The host restriction factor APOBEC3G and retroviral Vif protein coevolve due to ongoing genetic conflict

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3690816

HIV-1 Group P is unable to antagonize human tetherin by Vpu, Env or Nef.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3690816

Tetherin is a key effector of the antiretroviral activity of type I interferon in vitro and in vivo

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3690816

The breadth of antiviral activity of Apobec3DE in chimpanzees has been driven by positive selection

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3690816

Hexagonal assembly of a restricting TRIM5alpha protein

28 September 2017

1 reference

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The small interferon-induced transmembrane genes and proteins

28 September 2017

1 reference

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New developments in the induction and antiviral effectors of type I interferon

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3690816

Human Trim5α has additional activities that are uncoupled from retroviral capsid recognition

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3690816

TRIM5 suppresses cross-species transmission of a primate immunodeficiency virus and selects for emergence of resistant variants in the new species

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3690816

Immune evasion and counteraction of restriction factors by HIV-1 and other primate lentiviruses

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3690816

Ancient adaptive evolution of tetherin shaped the functions of Vpu and Nef in human immunodeficiency virus and primate lentiviruses.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3690816

Small molecular compounds inhibit HIV-1 replication through specifically stabilizing APOBEC3G

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3690816

Quantitative profiling of the full APOBEC3 mRNA repertoire in lymphocytes and tissues: implications for HIV-1 restriction

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3690816

Interactions of host APOBEC3 restriction factors with HIV-1 in vivo: implications for therapeutics

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3690816

Recognition of viruses by cytoplasmic sensors

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3690816

A composite of multiple signals distinguishes causal variants in regions of positive selection

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3690816

Tetherin-driven adaptation of Vpu and Nef function and the evolution of pandemic and nonpandemic HIV-1 strains.

28 September 2017

1 reference

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The evolutionary conundrum of pathogen mimicry

28 September 2017

1 reference

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Defining APOBEC3 expression patterns in human tissues and hematopoietic cell subsets

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3690816

Connections between antiviral defense and autoimmunity

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3690816

Molecular evolution of the antiretroviral TRIM5 gene.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3690816

Species-specific activity of HIV-1 Vpu and positive selection of tetherin transmembrane domain variants

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3690816

Essential role for either TRS1 or IRS1 in human cytomegalovirus replication

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3690816

Expression of murine APOBEC3 alleles in different mouse strains and their effect on mouse mammary tumor virus infection.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3690816

An expanded clade of rodent Trim5 genes

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3690816

Protein kinase R reveals an evolutionary model for defeating viral mimicry

28 September 2017

1 reference

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The artiodactyl APOBEC3 innate immune repertoire shows evidence for a multi-functional domain organization that existed in the ancestor of placental mammals

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3690816

Small-molecule inhibition of HIV-1 Vif.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3690816

Host restriction factors blocking retroviral replication

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3690816

Positive selection in the human genome: from genome scans to biological significance

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3690816

Functions, structure, and read-through alternative splicing of feline APOBEC3 genes

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3690816

Independent genesis of chimeric TRIM5-cyclophilin proteins in two primate species

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3690816

TRIMCyp expression in Old World primates Macaca nemestrina and Macaca fascicularis

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3690816

Positive selection and increased antiviral activity associated with the PARP-containing isoform of human zinc-finger antiviral protein

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3690816

Discordant evolution of the adjacent antiretroviral genes TRIM22 and TRIM5 in mammals

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3690816

Identification of two distinct human immunodeficiency virus type 1 Vif determinants critical for interactions with human APOBEC3G and APOBEC3F.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3690816

APOBEC3 inhibits mouse mammary tumour virus replication in vivo.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3690816

Balancing selection and the evolution of functional polymorphism in Old World monkey TRIM5alpha

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3690816

Generation of HIV-1 derivatives that productively infect macaque monkey lymphoid cells

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3690816

Generation of simian-tropic HIV-1 by restriction factor evasion

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3690816

Genomic insights into positive selection

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3690816

Inhibition of PKR by RNA and DNA viruses

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3690816

Interferon signalling network in innate defence

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3690816

Phosphorylation of a novel SOCS-box regulates assembly of the HIV-1 Vif-Cul5 complex that promotes APOBEC3G degradation

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3690816

A major genetic locus affecting resistance to infection with murine leukemia viruses. II. Apparent identity to a major locus described for resistance to friend murine leukemia virus

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3690816

Identification of a second interferon-regulated murine Mx gene

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3690816

Cutting edge: paradoxical roles of BST2/tetherin in promoting type I IFN response and viral infection

28 September 2017

1 reference

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Influenza virus resistance of wild mice: wild-type and mutant Mx alleles occur at comparable frequencies

31 May 2018

1 reference

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A large variation in the rates of synonymous substitution for RNA viruses and its relationship to a diversity of viral infection and transmission modes.

31 May 2018

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Phylogenetic evidence for the rapid evolution of human B19 erythrovirus

21 January 2018

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Error thresholds and the constraints to RNA virus evolution

21 January 2018

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Evolution of the AID/APOBEC family of polynucleotide (deoxy)cytidine deaminases.

21 January 2018

1 reference

Equine infectious anemia virus resists the antiretroviral activity of equine APOBEC3 proteins through a packaging-independent mechanism

21 January 2018

1 reference

A novel fusion gene, TRIM5-Cyclophilin A in the pig-tailed macaque determines its susceptibility to HIV-1 infection

21 January 2018

1 reference

The evolutionary dynamics of endogenous retroviruses.

21 January 2018

1 reference

Gene acquisition in HIV and SIV

21 January 2018

1 reference

Natural selection at major histocompatibility complex loci of vertebrates

21 January 2018

1 reference

Molecular phylogeny of Fv1

31 March 2020

1 reference

High-throughput assay to identify inhibitors of Vpu-mediated down-regulation of cell surface BST-2

31 March 2020

1 reference

https://pubmed.ncbi.nlm.nih.gov/22976433

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/NRI3295

1 reference

2633651

2633651

1 reference

1 reference

1 reference