RNA recognition by double-stranded RNA binding domains: a matter of shape and sequence (Q27023888)

Frédéric H. -T. Allain

series ordinal

3

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language of work or name

1 reference

June 2013

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Cellular and Molecular Life Sciences

published in

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volume

70

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issue

11

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page(s)

1875-95

1 reference

https://scigraph.springernature.com/pub.10.1007/s00018-012-1119-x

exact match

0 references

cites work

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The Solution Structure of the ADAR2 dsRBM-RNA Complex Reveals a Sequence-Specific Readout of the Minor Groove

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21 March 2017

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21 March 2017

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Shape-specific recognition in the structure of the Vts1p SAM domain with RNA.

21 March 2017

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Minihelix-containing RNAs mediate exportin-5-dependent nuclear export of the double-stranded RNA-binding protein ILF3

21 March 2017

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21 March 2017

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21 March 2017

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21 March 2017

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21 March 2017

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21 March 2017

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RNA editing of AMPA receptor subunit GluR-B: a base-paired intron-exon structure determines position and efficiency

21 March 2017

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cis-acting sequences responsible for anterior localization of bicoid mRNA in Drosophila embryos

21 March 2017

1 reference

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Characterization of a human TAR RNA-binding protein that activates the HIV-1 LTR

21 March 2017

1 reference

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Structure and specific RNA binding of ADAR2 double-stranded RNA binding motifs

21 March 2017

1 reference

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The developmental transcriptome of Drosophila melanogaster

21 March 2017

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The RNA recognition motif, a plastic RNA-binding platform to regulate post-transcriptional gene expression

7 April 2017

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Point mutation in an AMPA receptor gene rescues lethality in mice deficient in the RNA-editing enzyme ADAR2

7 April 2017

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7 April 2017

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RNAi keeps Atf1-bound stress response genes in check at nuclear pores

7 April 2017

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Mechanisms of dendritic mRNA transport and its role in synaptic tagging.

28 September 2017

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Regulation and functions of ADAR in drosophila

28 September 2017

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ADAR proteins: double-stranded RNA and Z-DNA binding domains

28 September 2017

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Functional conservation in human and Drosophila of Metazoan ADAR2 involved in RNA editing: loss of ADAR1 in insects.

28 September 2017

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Characterization of Aquifex aeolicus ribonuclease III and the reactivity epitopes of its pre-ribosomal RNA substrates

28 September 2017

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Recognition of siRNA asymmetry by TAR RNA binding protein.

28 September 2017

1 reference

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The double-stranded RNA-binding motif, a versatile macromolecular docking platform

28 September 2017

1 reference

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Protein families and RNA recognition

28 September 2017

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The double-stranded-RNA-binding motif: interference and much more

28 September 2017

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Oligomerization activity of a double-stranded RNA-binding domain

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3724394

A new alpha-helical extension promotes RNA binding by the dsRBD of Rnt1p RNAse III.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3724394

The brain-specific double-stranded RNA-binding protein Staufen2: nucleolar accumulation and isoform-specific exportin-5-dependent export

28 September 2017

1 reference

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Structural basis for recognition of the AGNN tetraloop RNA fold by the double-stranded RNA-binding domain of Rnt1p RNase III.

28 September 2017

1 reference

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Conservation of RNase III processing pathways and specificity in hemiascomycetes

28 September 2017

1 reference

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Recognition of double-stranded RNA by proteins and small molecules

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3724394

The dsRNA binding protein family: critical roles, diverse cellular functions

28 September 2017

1 reference

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Nucleocytoplasmic distribution of human RNA-editing enzyme ADAR1 is modulated by double-stranded RNA-binding domains, a leucine-rich export signal, and a putative dimerization domain.

28 September 2017

1 reference

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28 September 2017

RNA-protein interactions

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A physical interaction between Gar1p and Rnt1pi is required for the nuclear import of H/ACA small nucleolar RNA-associated proteins

28 September 2017

1 reference

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The RNase III family: a conserved structure and expanding functions in eukaryotic dsRNA metabolism.

28 September 2017

1 reference

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Dimerization of the 3'UTR of bicoid mRNA involves a two-step mechanism

28 September 2017

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Substrate recognition by a eukaryotic RNase III: the double-stranded RNA-binding domain of Rnt1p selectively binds RNA containing a 5'-AGNN-3' tetraloop

28 September 2017

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Proteins binding to duplexed RNA: one motif, multiple functions

28 September 2017

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Distinct roles of two conserved Staufen domains in oskar mRNA localization and translation

28 September 2017

1 reference

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Recognition of a conserved class of RNA tetraloops by Saccharomyces cerevisiae RNase III

28 September 2017

1 reference

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Themes in RNA-protein recognition.

28 September 2017

1 reference

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Function, mechanism and regulation of bacterial ribonucleases

28 September 2017

1 reference

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Miranda mediates asymmetric protein and RNA localization in the developing nervous system

28 September 2017

1 reference

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Regulation of ribonuclease III processing by double-helical sequence antideterminants

28 September 2017

1 reference

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Specific mutations near the amino terminus of double-stranded RNA-dependent protein kinase (PKR) differentially affect its double-stranded RNA binding and dimerization properties

28 September 2017

1 reference

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Minor-groove recognition of double-stranded RNA by the double-stranded RNA-binding domain from the RNA-activated protein kinase PKR.

28 September 2017

1 reference

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Two functionally distinct RNA-binding motifs in the regulatory domain of the protein kinase DAI

28 September 2017

1 reference

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Structure of the dsRNA binding domain of E. coli RNase III.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3724394

Exceptionally stable nucleic acid hairpins

28 September 2017

1 reference

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The anatomy of A-, B-, and Z-DNA.

28 September 2017

1 reference

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Structural studies of protein-nucleic acid interaction: the sources of sequence-specific binding

28 September 2017

1 reference

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Sequence-specific recognition of double helical nucleic acids by proteins

28 September 2017

1 reference

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Structures of the first and second double-stranded RNA-binding domains of human TAR RNA-binding protein

28 September 2017

1 reference

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Thermotoga maritima ribonuclease III. Characterization of thermostable biochemical behavior and analysis of conserved base pairs that function as reactivity epitopes for the Thermotoga 23S rRNA precursor

31 May 2018

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Intermediate states of ribonuclease III in complex with double-stranded RNA.

31 May 2018

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Tuning of RNA editing by ADAR is required in Drosophila

31 May 2018

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Noncatalytic assembly of ribonuclease III with double-stranded RNA.

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3724394

A-to-I pre-mRNA editing in Drosophila is primarily involved in adult nervous system function and integrity

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3724394

Molecular basis of double-stranded RNA-protein interactions: structure of a dsRNA-binding domain complexed with dsRNA.

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3724394

Structure of the double-stranded RNA-binding domain of the protein kinase PKR reveals the molecular basis of its dsRNA-mediated activation

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3724394

Mutational analysis of the double-stranded RNA (dsRNA) binding domain of the dsRNA-activated protein kinase, PKR.

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3724394

Staufen protein associates with the 3'UTR of bicoid mRNA to form particles that move in a microtubule-dependent manner.

31 May 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-012-1119-X

Sequence-specific recognition of RNA hairpins by the SAM domain of Vts1p

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-012-1119-X

Structural insight into the mechanism of double-stranded RNA processing by ribonuclease III.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-012-1119-X

Binding of double-stranded RNA to protein kinase PKR is required for dimerization and promotes critical autophosphorylation events in the activation loop.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-012-1119-X

The carboxy-terminal, M3 motifs of PACT and TRBP have opposite effects on PKR activity

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-012-1119-X

The interaction between DCL1 and HYL1 is important for efficient and precise processing of pri-miRNA in plant microRNA biogenesis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-012-1119-X

Staufen-dependent localization of prospero mRNA contributes to neuroblast daughter-cell fate.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-012-1119-X

Role of ADARs in mouse development.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-012-1119-X

Characterization of the reactivity determinants of a novel hairpin substrate of yeast RNase III.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-012-1119-X

Characterization of RNA sequence determinants and antideterminants of processing reactivity for a minimal substrate of Escherichia coli ribonuclease III.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-012-1119-X

Multiple RNA regulatory elements mediate distinct steps in localization of oskar mRNA.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3724394

Double-stranded RNA adenosine deaminases ADAR1 and ADAR2 have overlapping specificities

28 November 2018

1 reference

12 December 2020

Comparative mutational analysis of the double-stranded RNA binding domains of Xenopus laevis RNA-binding protein A

1 reference

12 December 2020

Protein-RNA recognition

1 reference

12 December 2020

Nuclear retention of fission yeast dicer is a prerequisite for RNAi-mediated heterochromatin assembly

1 reference

12 December 2020

Structure of an AAGU tetraloop and its contribution to substrate selection by yeast RNase III

1 reference

12 December 2020

Two RNA-binding motifs in the double-stranded RNA-activated protein kinase, DAI

1 reference

12 December 2020

10.1007/S00018-012-1119-X

Identifiers

DOI

1 reference

Dimensions Publication ID

3685210

1033308354

0 references

3685210

1 reference

1 reference

1 reference