Proteome wide purification and identification of O-GlcNAc-modified proteins using click chemistry and mass spectrometry (Q27334695)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23301498%20AND%20SRC:MED&resulttype=core&format=json

21 February 2020

title

Proteome wide purification and identification of O-GlcNAc-modified proteins using click chemistry and mass spectrometry (English)

1 reference

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21 February 2020

1 reference

4

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21 February 2020

Daan van Aalten

6

1 reference

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21 February 2020

Bernhard Kuster

8

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21 February 2020

author name string

Hannes Hahne

1

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21 February 2020

Nadine Sobotzki

2

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21 February 2020

Tamara Nyberg

3

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21 February 2020

Vladimir S Borodkin

5

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21 February 2020

Brian Agnew

7

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21 February 2020

language of work or name

English

0 references

publication date

18 January 2013

1 reference

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Journal of Proteome Research

21 February 2020

published in

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21 February 2020

volume

12

1 reference

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21 February 2020

issue

2

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21 February 2020

page(s)

927-936

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describes a project that uses

21 February 2020

1 reference

PhosphoSitePlus: a comprehensive resource for investigating the structure and function of experimentally determined post-translational modifications in man and mouse

1 reference

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RINGs of good and evil: RING finger ubiquitin ligases at the crossroads of tumour suppression and oncogenesis

21 March 2017

1 reference

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Cell-Penetrant, Nanomolar O-GlcNAcase Inhibitors Selective against Lysosomal Hexosaminidases

21 March 2017

1 reference

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A probability-based approach for high-throughput protein phosphorylation analysis and site localization

21 March 2017

1 reference

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Mapping sites of O-GlcNAc modification using affinity tags for serine and threonine post-translational modifications

21 March 2017

1 reference

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Cycling of O-linked beta-N-acetylglucosamine on nucleocytoplasmic proteins

21 March 2017

1 reference

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The hexosamine signaling pathway: deciphering the "O-GlcNAc code"

21 March 2017

1 reference

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Discovery of O-GlcNAc-modified proteins in published large-scale proteome data

21 March 2017

1 reference

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Global identification and characterization of both O-GlcNAcylation and phosphorylation at the murine synapse

21 March 2017

1 reference

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Characterization of the histone acetyltransferase (HAT) domain of a bifunctional protein with activable O-GlcNAcase and HAT activities

21 March 2017

1 reference

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AMPK: a nutrient and energy sensor that maintains energy homeostasis

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4946622

Protocol for micro-purification, enrichment, pre-fractionation and storage of peptides for proteomics using StageTips

7 April 2017

1 reference

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Tandem mass spectrometry identifies many mouse brain O-GlcNAcylated proteins including EGF domain-specific O-GlcNAc transferase targets

7 April 2017

1 reference

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Metabolic labeling enables selective photocrosslinking of O-GlcNAc-modified proteins to their binding partners.

29 September 2017

1 reference

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Insights into O-linked N-acetylglucosamine ([0-9]O-GlcNAc) processing and dynamics through kinetic analysis of O-GlcNAc transferase and O-GlcNAcase activity on protein substrates.

29 September 2017

1 reference

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AMP-activated protein kinase: nature's energy sensor

29 September 2017

1 reference

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Combining high-energy C-trap dissociation and electron transfer dissociation for protein O-GlcNAc modification site assignment

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4946622

Polycomb repressive complex 2 is necessary for the normal site-specific O-GlcNAc distribution in mouse embryonic stem cells

29 September 2017

1 reference

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Chemical reporters for fluorescent detection and identification of O-GlcNAc-modified proteins reveal glycosylation of the ubiquitin ligase NEDD4-1

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4946622

A novel two-stage tandem mass spectrometry approach and scoring scheme for the identification of O-GlcNAc modified peptides

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4946622

dbOGAP - an integrated bioinformatics resource for protein O-GlcNAcylation.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4946622

Cross talk between O-GlcNAcylation and phosphorylation: roles in signaling, transcription, and chronic disease

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4946622

Confident phosphorylation site localization using the Mascot Delta Score

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4946622

Site-specific interplay between O-GlcNAcylation and phosphorylation in cellular regulation

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4946622

Extensive crosstalk between O-GlcNAcylation and phosphorylation regulates cytokinesis

29 September 2017

1 reference

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Enrichment and site mapping of O-linked N-acetylglucosamine by a combination of chemical/enzymatic tagging, photochemical cleavage, and electron transfer dissociation mass spectrometry

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4946622

Increasing O-GlcNAc levels: An overview of small-molecule inhibitors of O-GlcNAcase.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4946622

O-linked beta-N-acetylglucosamine (O-GlcNAc): Extensive crosstalk with phosphorylation to regulate signaling and transcription in response to nutrients and stress

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4946622

The hexosamine signaling pathway: O-GlcNAc cycling in feast or famine

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4946622

Identification of protein O-GlcNAcylation sites using electron transfer dissociation mass spectrometry on native peptides

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4946622

Identification of new O-GlcNAc modified proteins using a click-chemistry-based tagging

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4946622

An iterative statistical approach to the identification of protein phosphorylation motifs from large-scale data sets

29 September 2017

1 reference

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Tagging-via-substrate strategy for probing O-GlcNAc modified proteins.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4946622

Profiling enzyme activities in vivo using click chemistry methods

29 September 2017

1 reference

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Susceptibility of the hydroxyl groups in serine and threonine to β-elimination/Michael addition under commonly used moderately high-temperature conditions

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4946622

A chemical approach for identifying O-GlcNAc-modified proteins in cells

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4946622

Beta-elimination: an unexpected artefact in proteome analysis

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4946622

Dynamic O-glycosylation of nuclear and cytosolic proteins: further characterization of the nucleocytoplasmic beta-N-acetylglucosaminidase, O-GlcNAcase

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4946622

Modulation of O-linked N-acetylglucosamine levels on nuclear and cytoplasmic proteins in vivo using the peptide O-GlcNAc-beta-N-acetylglucosaminidase inhibitor O-(2-acetamido-2-deoxy-D-glucopyranosylidene)amino-N-phenylcarbamate

29 September 2017

1 reference

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Accurate and sensitive peptide identification with Mascot Percolator

29 September 2017

1 reference

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Chronic hexosamine flux stimulates fatty acid oxidation by activating AMP-activated protein kinase in adipocytes.

2 June 2018

1 reference

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O-linked N-acetylglucosamine proteomics of postsynaptic density preparations using lectin weak affinity chromatography and mass spectrometry

2 June 2018

1 reference

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Metabolic labeling and click chemistry detection of glycoprotein markers of mesenchymal stem cell differentiation

2 June 2018

1 reference

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Semi-supervised learning for peptide identification from shotgun proteomics datasets.

27 November 2018

1 reference

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Global identification of O-GlcNAc-modified proteins

27 November 2018

1 reference

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Quantitative analysis of both protein expression and serine / threonine post-translational modifications through stable isotope labeling with dithiothreitol

27 November 2018

1 reference

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Improved beta-elimination-based affinity purification strategy for enrichment of phosphopeptides

27 November 2018

1 reference

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Localization of O-glycosylation sites in peptides by electron capture dissociation in a Fourier transform mass spectrometer

27 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23301498

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Topography and polypeptide distribution of terminal N-acetylglucosamine residues on the surfaces of intact lymphocytes. Evidence for O-linked GlcNAc

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23301498

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1021/PR300967Y

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23301498%20AND%20SRC:MED&resulttype=core&format=json

21 February 2020

1 reference

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23301498%20AND%20SRC:MED&resulttype=core&format=json

21 February 2020

PubMed publication ID

23301498

2 references