Nucleosomal DNA binding drives the recognition of H3K36-methylated nucleosomes by the PSIP1-PWWP domain (Q27678049)

6

0 references

Hugo van Ingen

8

0 references

Edwin Cuppen

5

0 references

Marieke Simonis

3

0 references

Sebastiaan van Heesch

4

0 references

author name string

Rick van Nuland

1

0 references

Frederik Ma van Schaik

2

0 references

Ht Marc Timmers

7

0 references

publication date

8 May 2013

0 references

published in

Epigenetics & Chromatin

1 reference

describes a project that uses

volume

6

0 references

issue

1

0 references

page(s)

12

0 references

ImageJ

1 reference

Europe PubMed Central

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC3663649/fullTextXML

based on heuristic

inferred from PubMed Central ID database lookup

exact match

https://scigraph.springernature.com/pub.10.1186/1756-8935-6-12

0 references

cites work

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Solution structure of the Pdp1 PWWP domain reveals its unique binding sites for methylated H4K20 and DNA

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20 March 2017

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The transcriptional co-activator LEDGF/p75 displays a dynamic scan-and-lock mechanism for chromatin tethering

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A tripartite DNA-binding element, comprised of the nuclear localization signal and two AT-hook motifs, mediates the association of LEDGF/p75 with chromatin in vivo

20 March 2017

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Isolation of cDNAs encoding novel transcription coactivators p52 and p75 reveals an alternate regulatory mechanism of transcriptional activation

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Chromatin modifications and their function

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HADDOCK: a protein-protein docking approach based on biochemical or biophysical information

20 March 2017

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Protein NMR structure determination with automated NOE assignment using the new software CANDID and the torsion angle dynamics algorithm DYANA

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Molecular basis for site-specific read-out of histone H3K4me3 by the BPTF PHD finger of NURF

20 March 2017

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Nuclear protein LEDGF/p75 recognizes supercoiled DNA by a novel DNA-binding domain

20 March 2017

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Molecular mechanism of histone H3K4me3 recognition by plant homeodomain of ING2

20 March 2017

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7 April 2017

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Histone and chromatin cross-talk

7 April 2017

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The Tudor domain 'Royal Family': Tudor, plant Agenet, Chromo, PWWP and MBT domains

7 April 2017

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LEDGF (p75) promotes DNA-end resection and homologous recombination

7 April 2017

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Psip1/Ledgf p52 binds methylated histone H3K36 and splicing factors and contributes to the regulation of alternative splicing

29 September 2017

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Understanding the language of Lys36 methylation at histone H3.

29 September 2017

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Role of the PWWP domain of lens epithelium-derived growth factor (LEDGF)/p75 cofactor in lentiviral integration targeting

29 September 2017

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Architecture of the high mobility group nucleosomal protein 2-nucleosome complex as revealed by methyl-based NMR.

29 September 2017

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Efficient double fragmentation ChIP-seq provides nucleotide resolution protein-DNA binding profiles

29 September 2017

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Chromatin interaction of TATA-binding protein is dynamically regulated in human cells

29 September 2017

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Lens epithelium-derived growth factor fusion proteins redirect HIV-1 DNA integration

29 September 2017

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29 September 2017

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Identification and characterization of PWWP domain residues critical for LEDGF/p75 chromatin binding and human immunodeficiency virus type 1 infectivity.

29 September 2017

1 reference

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29 September 2017

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Mps1 kinase activity restrains anaphase during an unperturbed mitosis and targets Mad2 to kinetochores.

29 September 2017

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Recognition of trimethyllysine by a chromodomain is not driven by the hydrophobic effect

29 September 2017

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29 September 2017

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Identification and characterization of the chromatin-binding domains of the HIV-1 integrase interactor LEDGF/p75.

29 September 2017

1 reference

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High resolution structure of the HDGF PWWP domain: a potential DNA binding domain.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3663649

Mars -- robust automatic backbone assignment of proteins

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3663649

Fragment-based lead discovery

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3663649

Polymer models of protein stability, folding, and interactions.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3663649

Reconstitution of nucleosome core particles from recombinant histones and DNA.

29 September 2017

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29 September 2017

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The site-specific installation of methyl-lysine analogs into recombinant histones

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3663649

Human mismatch repair protein MSH6 contains a PWWP domain that targets double stranded DNA.

2 June 2018

1 reference

https://api.crossref.org/works/10.1186%2F1756-8935-6-12

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1756-8935-6-12

A multidomain flexible docking approach to deal with large conformational changes in the modeling of biomolecular complexes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1756-8935-6-12

Structural insight into the recognition of the H3K4me3 mark by the TFIID subunit TAF3.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1756-8935-6-12

DNA binding domains and nuclear localization signal of LEDGF: contribution of two helix-turn-helix (HTH)-like domains and a stretch of 58 amino acids of the N-terminal to the trans-activation potential of LEDGF

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23656834

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1756-8935-6-12

1 reference

Dimensions Publication ID

2776910

1 reference

9 September 2019

https://scigraph.springernature.com/pub.10.1186/1756-8935-6-12

2776910

1 reference

1 reference

1 reference