Structural determinants of HIV-1 Vif susceptibility and DNA binding in APOBEC3F (Q27680506)

1

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Azmiri Sultana

2

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Farshad C Azimi

3

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Jeffrey E Lee

NMR structure of human restriction factor APOBEC3A reveals substrate binding and enzyme specificity

4

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language of work or name

English

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publication date

2013

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published in

Nature Communications

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volume

4

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page(s)

2593

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cites work

1 reference

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Crystal Structure of the DNA Cytosine Deaminase APOBEC3F: The Catalytically Active and HIV-1 Vif-Binding Domain

20 March 2017

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The APOBEC3C crystal structure and the interface for HIV-1 Vif binding

20 March 2017

1 reference

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Human and rhesus APOBEC3D, APOBEC3F, APOBEC3G, and APOBEC3H demonstrate a conserved capacity to restrict Vif-deficient HIV-1

20 March 2017

1 reference

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Crystal structure of the APOBEC3G catalytic domain reveals potential oligomerization interfaces

20 March 2017

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20 March 2017

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20 March 2017

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Structure, interaction and real-time monitoring of the enzymatic reaction of wild-type APOBEC3G

20 March 2017

1 reference

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Crystal structure of the anti-viral APOBEC3G catalytic domain and functional implications

20 March 2017

1 reference

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Structure of the DNA deaminase domain of the HIV-1 restriction factor APOBEC3G

20 March 2017

1 reference

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Identification of amino acid residues in APOBEC3G required for regulation by human immunodeficiency virus type 1 Vif and Virion encapsidation

20 March 2017

1 reference

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Identification of APOBEC3DE as another antiretroviral factor from the human APOBEC family

20 March 2017

1 reference

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Mutational comparison of the single-domained APOBEC3C and double-domained APOBEC3F/G anti-retroviral cytidine deaminases provides insight into their DNA target site specificities

20 March 2017

1 reference

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Human APOBEC3F is another host factor that blocks human immunodeficiency virus type 1 replication

20 March 2017

1 reference

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An anthropoid-specific locus of orphan C to U RNA-editing enzymes on chromosome 22

20 March 2017

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Phasercrystallographic software

20 March 2017

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Protein structure prediction on the Web: a case study using the Phyre server

20 March 2017

1 reference

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Clustal W and Clustal X version 2.0

20 March 2017

1 reference

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Coot: model-building tools for molecular graphics

20 March 2017

1 reference

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Isolation of a human gene that inhibits HIV-1 infection and is suppressed by the viral Vif protein

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4956467

The finer things in X-ray diffraction data collection

20 March 2017

2 references

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20 March 2017

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4956467

HIV-1 Vif Blocks the Antiviral Activity of APOBEC3G by Impairing Both Its Translation and Intracellular Stability

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4956467

DNA deamination mediates innate immunity to retroviral infection

20 March 2017

1 reference

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Broad antiretroviral defence by human APOBEC3G through lethal editing of nascent reverse transcripts

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4956467

The retroviral hypermutation specificity of APOBEC3F and APOBEC3G is governed by the C-terminal DNA cytosine deaminase domain

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4956467

APOBEC3F properties and hypermutation preferences indicate activity against HIV-1 in vivo

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4956467

RNA-dependent oligomerization of APOBEC3G is required for restriction of HIV-1

20 March 2017

1 reference

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A new bioinformatics analysis tools framework at EMBL-EBI.

20 March 2017

1 reference

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Single-strand specificity of APOBEC3G accounts for minus-strand deamination of the HIV genome

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4956467

The antiretroviral enzyme APOBEC3G is degraded by the proteasome in response to HIV-1 Vif

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4956467

HIV-1 viral infectivity factor (Vif) alters processive single-stranded DNA scanning of the retroviral restriction factor APOBEC3G

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4956467

APOBEC2 is a monomer in solution: implications for APOBEC3G models

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4956467

A single amino acid in human APOBEC3F alters susceptibility to HIV-1 Vif

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4956467

Identification of specific determinants of human APOBEC3F, APOBEC3C, and APOBEC3DE and African green monkey APOBEC3F that interact with HIV-1 Vif.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4956467

Rationalisation of the differences between APOBEC3G structures from crystallography and NMR studies by molecular dynamics simulations

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4956467

Identification of 81LGxGxxIxW89 and 171EDRW174 domains from human immunodeficiency virus type 1 Vif that regulate APOBEC3G and APOBEC3F neutralizing activity.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4956467

Quantitative profiling of the full APOBEC3 mRNA repertoire in lymphocytes and tissues: implications for HIV-1 restriction

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4956467

APOBEC3F and APOBEC3G inhibit HIV-1 DNA integration by different mechanisms.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4956467

Multiple ways of targeting APOBEC3-virion infectivity factor interactions for anti-HIV-1 drug development.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4956467

Functional analysis and structural modeling of human APOBEC3G reveal the role of evolutionarily conserved elements in the inhibition of human immunodeficiency virus type 1 infection and Alu transposition.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4956467

Identification of a novel WxSLVK motif in the N terminus of human immunodeficiency virus and simian immunodeficiency virus Vif that is critical for APOBEC3G and APOBEC3F neutralization.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4956467

Dissecting APOBEC3G substrate specificity by nucleoside analog interference.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4956467

Regulation of APOBEC3 proteins by a novel YXXL motif in human immunodeficiency virus type 1 Vif and simian immunodeficiency virus SIVagm Vif

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4956467

Guidelines for naming nonprimate APOBEC3 genes and proteins

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4956467

Characterization of conserved motifs in HIV-1 Vif required for APOBEC3G and APOBEC3F interaction

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4956467

Identification of two distinct human immunodeficiency virus type 1 Vif determinants critical for interactions with human APOBEC3G and APOBEC3F.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4956467

APOBEC3G multimers are recruited to the plasma membrane for packaging into human immunodeficiency virus type 1 virus-like particles in an RNA-dependent process requiring the NC basic linker

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4956467

The Vif Protein of HIV Triggers Degradation of the Human Antiretroviral DNA Deaminase APOBEC3G

29 September 2017

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS3593

HIV-1 Vif binds to APOBEC3G mRNA and inhibits its translation

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS3593

Biophysical characterization of recombinant HIV-1 subtype C virus infectivity factor

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS3593

ENDscript: a workflow to display sequence and structure information

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS3593

An automated microseed matrix-screening method for protein crystallization

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24185281

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Hydrophobicities of the nucleic acid bases: distribution coefficients from water to cyclohexane

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24185281

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/NCOMMS3593

1 reference

Dimensions Publication ID

302309

ADS bibcode

2013NatCo...4.2593S

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1006409934

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302309

1 reference

1 reference

1 reference