Integrating cereal genomics to support innovation in the Triticeae (Q27694632)

6

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Nils Stein

object named as

N. Stein

2

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author name string

C. Feuillet

1

1 reference

S. Praud

4

1 reference

K. Mayer

5

1 reference

K. Eversole

7

1 reference

R. Appels

8

1 reference

language of work or name

1 reference

November 2012

1 reference

Functional and Integrative Genomics

1 November 2012

4 references

29 June 2019

22 October 2019

4 November 2019

25 November 2020

5 references

29 June 2019

22 October 2019

4 November 2019

25 November 2020

12

1 reference

issue

4

1 reference

page(s)

573-83

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Creative Commons Attribution 2.0 Generic

copyright license

start time

1 November 2012

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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20 March 2017

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DNA repair and crossing over favor similar chromosome regions as discovered in radiation hybrid of Triticum

20 March 2017

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Advances in BAC-based physical mapping and map integration strategies in plants

20 March 2017

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LTC: a novel algorithm to improve the efficiency of contig assembly for physical mapping in complex genomes

20 March 2017

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Genome sequencing and analysis of the model grass Brachypodium distachyon

20 March 2017

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The B73 Maize Genome: Complexity, Diversity, and Dynamics

20 March 2017

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The Sorghum bicolor genome and the diversification of grasses

20 March 2017

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Six-rowed barley originated from a mutation in a homeodomain-leucine zipper I-class homeobox gene

20 March 2017

1 reference

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Retrotransposon-based insertion polymorphisms (RBIP) for high throughput marker analysis

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3508266

The CC-NB-LRR-type Rdg2a resistance gene confers immunity to the seed-borne barley leaf stripe pathogen in the absence of hypersensitive cell death

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3508266

High-resolution genotyping via whole genome hybridizations to microarrays containing long oligonucleotide probes

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3508266

Cleistogamous flowering in barley arises from the suppression of microRNA-guided HvAP2 mRNA cleavage

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3508266

Reconstruction of monocotelydoneous proto-chromosomes reveals faster evolution in plants than in animals

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3508266

A robust, simple genotyping-by-sequencing (GBS) approach for high diversity species

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3508266

The map-based sequence of the rice genome

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3508266

A SHORT INTERNODES (SHI) family transcription factor gene regulates awn elongation and pistil morphology in barley

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3508266

Allelic variations of a light harvesting chlorophyll a/b-binding protein gene (Lhcb1) associated with agronomic traits in barley.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3508266

TriAnnot: A Versatile and High Performance Pipeline for the Automated Annotation of Plant Genomes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3508266

Reference genome sequence of the model plant Setaria

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3508266

Marker-assisted selection for disease resistance in wheat and barley breeding

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3508266

Development of high-density genetic maps for barley and wheat using a novel two-enzyme genotyping-by-sequencing approach

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3508266

Functional markers in wheat: current status and future prospects

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3508266

Whole Genome Profiling provides a robust framework for physical mapping and sequencing in the highly complex and repetitive wheat genome

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3508266

Divergent functions of orthologous NAC transcription factors in wheat and rice

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3508266

A 3,000-loci transcription map of chromosome 3B unravels the structural and functional features of gene islands in hexaploid wheat

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3508266

Sequencing wheat chromosome arm 7BS delimits the 7BS/4AL translocation and reveals homoeologous gene conservation

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3508266

Reconstruction of the synthetic W7984 x Opata M85 wheat reference population

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3508266

Sequence-based marker development in wheat: advances and applications to breeding

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3508266

Targeted analysis of nucleotide and copy number variation by exon capture in allotetraploid wheat genome

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3508266

Transcript-specific, single-nucleotide polymorphism discovery and linkage analysis in hexaploid bread wheat (Triticum aestivum L.).

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3508266

BAC library resources for map-based cloning and physical map construction in barley (Hordeum vulgare L.).

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3508266

Discovery of rare mutations in populations: TILLING by sequencing

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3508266

Sequencing and assembly of low copy and genic regions of isolated Triticum aestivum chromosome arm 7DS.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3508266

Sequence-based physical mapping of complex genomes by whole genome profiling

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3508266

Specific patterns of gene space organisation revealed in wheat by using the combination of barley and wheat genomic resources

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3508266

Genome-wide association mapping to candidate polymorphism resolution in the unsequenced barley genome

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3508266

Crop genome sequencing: lessons and rationales

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3508266

Germin-like proteins (GLPs) in cereal genomes: gene clustering and dynamic roles in plant defence.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3508266

A unique wheat disease resistance-like gene governs effector-triggered susceptibility to necrotrophic pathogens

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3508266

Wheat beta-expansin (EXPB11) genes: Identification of the expressed gene on chromosome 3BS carrying a pollen allergen domain

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3508266

A highly conserved gene island of three genes on chromosome 3B of hexaploid wheat: diverse gene function and genomic structure maintained in a tightly linked block

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3508266

Development of chromosome-specific BAC resources for genomics of bread wheat

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3508266

TILLING in the two-rowed barley cultivar 'Barke' reveals preferred sites of functional diversity in the gene HvHox1

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3508266

Development and implementation of high-throughput SNP genotyping in barley

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3508266

Accuracy of breeding values of 'unrelated' individuals predicted by dense SNP genotyping

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3508266

Centromeres: long intergenic spaces with adaptive features

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3508266

A tale of two centromeres--diversity of structure but conservation of function in plants and animals

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3508266

Detailed recombination studies along chromosome 3B provide new insights on crossover distribution in wheat (Triticum aestivum L.).

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3508266

A physical map of the 1-gigabase bread wheat chromosome 3B.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3508266

The stem rust resistance gene Rpg5 encodes a protein with nucleotide-binding-site, leucine-rich, and protein kinase domains

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3508266

Dynamics and differential proliferation of transposable elements during the evolution of the B and A genomes of wheat

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3508266

Barley grain with adhering hulls is controlled by an ERF family transcription factor gene regulating a lipid biosynthesis pathway

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3508266

Boron-toxicity tolerance in barley arising from efflux transporter amplification

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3508266

Genome plasticity a key factor in the success of polyploid wheat under domestication

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3508266

Chromosome-based genomics in the cereals

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3508266

Methods for linkage disequilibrium mapping in crops.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3508266

The wheat and barley vernalization gene VRN3 is an orthologue of FT

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3508266

Development of an expressed sequence tag (EST) resource for wheat (Triticum aestivum L.): EST generation, unigene analysis, probe selection and bioinformatics for a 16,000-locus bin-delineated map.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3508266

Dissecting large and complex genomes: flow sorting and BAC cloning of individual chromosomes from bread wheat

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3508266

Sequence polymorphism in polyploid wheat and their d-genome diploid ancestor

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3508266

The wheat VRN2 gene is a flowering repressor down-regulated by vernalization

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3508266

High-throughput fingerprinting of bacterial artificial chromosomes using the snapshot labeling kit and sizing of restriction fragments by capillary electrophoresis

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3508266

Map-based cloning of leaf rust resistance gene Lr21 from the large and polyploid genome of bread wheat.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3508266

Positional cloning of the wheat vernalization gene VRN1

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3508266

The barley stem rust-resistance gene Rpg1 is a novel disease-resistance gene with homology to receptor kinases

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3508266

Contigs built with fingerprints, markers, and FPC V4.7.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3508266

Ribosomal RNA multigene loci: nomads of the Triticeae genomes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3508266

New cis-regulatory elements in the Rht-D1b locus region of wheat

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3508266

Insertion site-based polymorphism markers open new perspectives for genome saturation and marker-assisted selection in wheat

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3508266

A kinase-START gene confers temperature-dependent resistance to wheat stripe rust

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3508266

The barley Mlo gene: a novel control element of plant pathogen resistance

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3508266

Comparative sequence analysis of VRN1 alleles of Lolium perenne with the co-linear regions in barley, wheat, and rice

2 June 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10142-012-0300-5

SSCP-SNP in pearl millet--a new marker system for comparative genetics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10142-012-0300-5

Molecular basis of evolutionary events that shaped the hardness locus in diploid and polyploid wheat species (Triticum and Aegilops).

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10142-012-0300-5

Sixty million years in evolution of soft grain trait in grasses: emergence of the softness locus in the common ancestor of Pooideae and Ehrhartoideae, after their divergence from Panicoideae

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10142-012-0300-5

Megabase level sequencing reveals contrasted organization and evolution patterns of the wheat gene and transposable element spaces

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10142-012-0300-5

Microcolinearity between a 2-cM region encompassing the grain protein content locus Gpc-6B1 on wheat chromosome 6B and a 350-kb region on rice chromosome 2.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10142-012-0300-5

Analysis of the barley bract suppression gene Trd1.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10142-012-0300-5

A multiparent advanced generation inter-cross population for genetic analysis in wheat.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10142-012-0300-5

Lr34 multi-pathogen resistance ABC transporter: molecular analysis of homoeologous and orthologous genes in hexaploid wheat and other grass species

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10142-012-0300-5

Gene content and virtual gene order of barley chromosome 1H.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10142-012-0300-5

Unlocking the barley genome by chromosomal and comparative genomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10142-012-0300-5

Association mapping for quality traits in soft winter wheat

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10142-012-0300-5

The pseudo-response regulator Ppd-H1 provides adaptation to photoperiod in barley

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10142-012-0300-5

Frequent gene movement and pseudogene evolution is common to the large and complex genomes of wheat, barley, and their relatives

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10142-012-0300-5

Targeted re-sequencing of the allohexaploid wheat exome

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10142-012-0300-5

Large-scale analysis of the barley transcriptome based on expressed sequence tags

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10142-012-0300-5

Genome sequence of foxtail millet (Setaria italica) provides insights into grass evolution and biofuel potential

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10142-012-0300-5

TILLMore, a resource for the discovery of chemically induced mutants in barley

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10142-012-0300-5

Highly parallel gene-to-BAC addressing using microarrays

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3508266

Analysis of genetic structure in a panel of elite wheat varieties and relevance for association mapping

27 November 2018

1 reference

12 December 2020

A method to produce radiation hybrids for the D-genome chromosomes of wheat (Triticum aestivum L.).

1 reference

12 December 2020

Vrn-D4 is a vernalization gene located on the centromeric region of chromosome 5D in hexaploid wheat

1 reference

12 December 2020

Next-generation sequencing and syntenic integration of flow-sorted arms of wheat chromosome 4A exposes the chromosome structure and gene content

1 reference

12 December 2020

Genomics in cereals: from genome-wide conserved orthologous set (COS) sequences to candidate genes for trait dissection

1 reference

12 December 2020

10.1007/S10142-012-0300-5

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DOI

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1 reference

PubMed publication ID

23161406

1 reference