ISWI and CHD chromatin remodelers bind promoters but act in gene bodies (Q27931272)

GOA release 2020-03-11

DNA translocase YOR304W

1 reference

Chromatin-remodeling ATPase CHD1 YER164W

GOA release 2020-03-11

1 reference

Creative Commons Attribution 4.0 International

GOA release 2020-03-11

3

Steven Henikoff

0 references

author name string

Gabriel E Zentner

series ordinal

1

0 references

Toshio Tsukiyama

series ordinal

2

0 references

language of work or name

English

0 references

publication date

2013

0 references

1 reference

1 December 2016

9

0 references

issue

2

0 references

page(s)

e1003317

0 references

copyright license

start time

28 February 2013

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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20 March 2017

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Histone H3K4 and K36 methylation, Chd1 and Rpd3S oppose the functions of Saccharomyces cerevisiae Spt4-Spt5 in transcription

20 March 2017

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Chromatin remodelling at promoters suppresses antisense transcription

20 March 2017

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The Dpb4 subunit of ISW2 is anchored to extranucleosomal DNA.

20 March 2017

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The ISWI and CHD1 chromatin remodelling activities influence ADH2 expression and chromatin organization

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Global nucleosome occupancy in yeast

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Ssn6-Tup1 requires the ISW2 complex to position nucleosomes in Saccharomyces cerevisiae

20 March 2017

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Chromatin remodeling protein Chd1 interacts with transcription elongation factors and localizes to transcribed genes

20 March 2017

1 reference

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The chromo domain protein chd1p from budding yeast is an ATP-dependent chromatin-modifying factor

20 March 2017

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A suppressor of two essential checkpoint genes identifies a novel protein that negatively affects dNTP pools

20 March 2017

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Dissecting the regulatory circuitry of a eukaryotic genome

20 March 2017

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CHD1 interacts with SSRP1 and depends on both its chromodomain and its ATPase/helicase-like domain for proper association with chromatin

20 March 2017

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Java Treeview--extensible visualization of microarray data

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Functional dissection of protein complexes involved in yeast chromosome biology using a genetic interaction map

7 April 2017

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Replacement of chromosome segments with altered DNA sequences constructed in vitro

7 April 2017

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Chromatin remodeling by the CHD7 protein is impaired by mutations that cause human developmental disorders

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3585014

CHD1 remodelers regulate nucleosome spacing in vitro and align nucleosomal arrays over gene coding regions in S. pombe.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3585014

Chd1 chromatin remodelers maintain nucleosome organization and repress cryptic transcription.

29 September 2017

1 reference

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Hrp3 controls nucleosome positioning to suppress non-coding transcription in eu- and heterochromatin

29 September 2017

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In vivo effects of histone H3 depletion on nucleosome occupancy and position in Saccharomyces cerevisiae

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3585014

Tension-dependent nucleosome remodeling at the pericentromere in yeast

29 September 2017

1 reference

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PaxDb, a database of protein abundance averages across all three domains of life

29 September 2017

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Genome-wide protein-DNA binding dynamics suggest a molecular clutch for transcription factor function

29 September 2017

1 reference

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Nucleosome positioning: bringing order to the eukaryotic genome

29 September 2017

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Tripartite organization of centromeric chromatin in budding yeast

29 September 2017

1 reference

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Comprehensive genome-wide protein-DNA interactions detected at single-nucleotide resolution

29 September 2017

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Epigenome characterization at single base-pair resolution.

29 September 2017

1 reference

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Mediator coordinates PIC assembly with recruitment of CHD1

29 September 2017

1 reference

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Extranucleosomal DNA binding directs nucleosome sliding by Chd1

29 September 2017

1 reference

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SWI/SNF nucleosome remodellers and cancer.

29 September 2017

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Multiple sequence-specific factors generate the nucleosome-depleted region on CLN2 promoter.

29 September 2017

1 reference

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Integrative genomic analysis of human ribosomal DNA.

29 September 2017

1 reference

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Extensive role of the general regulatory factors, Abf1 and Rap1, in determining genome-wide chromatin structure in budding yeast

29 September 2017

1 reference

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Chromatin remodeling around nucleosome-free regions leads to repression of noncoding RNA transcription

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3585014

The role of nucleosome positioning in the evolution of gene regulation

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3585014

Dynamics of nucleosome remodelling by individual ACF complexes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3585014

The chromatin remodeller ACF acts as a dimeric motor to space nucleosomes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3585014

Mechanisms that specify promoter nucleosome location and identity

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3585014

Active establishment of centromeric CENP-A chromatin by RSF complex

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3585014

Analysis of transcription factor interactions in osteoblasts using competitive chromatin immunoprecipitation

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3585014

Centromere identity is specified by a single centromeric nucleosome in budding yeast

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3585014

CHD proteins: a diverse family with strong ties

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3585014

Nucleosome stability mediated by histone variants H3.3 and H2A.Z.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3585014

Translational and rotational settings of H2A.Z nucleosomes across the Saccharomyces cerevisiae genome.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3585014

The Chd family of chromatin remodelers

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3585014

Dependency of ISW1a chromatin remodeling on extranucleosomal DNA.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3585014

Nucleosome displacement in transcription

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3585014

Evidence for eviction and rapid deposition of histones upon transcriptional elongation by RNA polymerase II.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3585014

Functional role of extranucleosomal DNA and the entry site of the nucleosome in chromatin remodeling by ISW2.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3585014

Evidence for distinct mechanisms facilitating transcript elongation through chromatin in vivo

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3585014

Topography of the ISW2-nucleosome complex: insights into nucleosome spacing and chromatin remodeling

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3585014

Immunoprecipitation of native chromatin: NChIP.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3585014

DNA analysis servers: plot.it, bend.it, model.it and IS.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3585014

Mutant chromatin remodeling protein SMARCAL1 causes Schimke immuno-osseous dysplasia.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3585014

dMi-2 and ISWI chromatin remodelling factors have distinct nucleosome binding and mobilization properties

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3585014

Characterization of the imitation switch subfamily of ATP-dependent chromatin-remodeling factors in Saccharomyces cerevisiae

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3585014

ISWI, a member of the SWI2/SNF2 ATPase family, encodes the 140 kDa subunit of the nucleosome remodeling factor

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3585014

ATP-dependent nucleosome disruption at a heat-shock promoter mediated by binding of GAGA transcription factor.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3585014

Genome-wide nucleosome specificity and directionality of chromatin remodelers.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3585014

A role for Snf2-related nucleosome-spacing enzymes in genome-wide nucleosome organization

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3585014

Widespread remodeling of mid-coding sequence nucleosomes by Isw1.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3585014

Antagonistic forces that position nucleosomes in vivo.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3585014

Identification of multiple distinct Snf2 subfamilies with conserved structural motifs.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3585014

Genome-wide identification of Isw2 chromatin-remodeling targets by localization of a catalytically inactive mutant

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3585014

The chromatin-remodeling enzyme ACF is an ATP-dependent DNA length sensor that regulates nucleosome spacing

2 June 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1003317

Dynamics of Replication-Independent Histone Turnover in Budding Yeast

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1003317

Genome-scale profiling of histone H3.3 replacement patterns.

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1003317

Schizosaccharomyces pombe genome-wide nucleosome mapping reveals positioning mechanisms distinct from those of Saccharomyces cerevisiae

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23468649

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Molecular biology. Genetic events that shape the cancer epigenome

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23468649

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PGEN.1003317

1 reference

2484163

2484163

1 reference

1 reference

1 reference