Writ large: Genomic dissection of the effect of cellular environment on immune response (Q28068327)

A. Regev

series ordinal

2

1 reference

language of work or name

1 reference

7 October 2016

1 reference

number of pages

5

1 reference

based on heuristic

inferred from page(s)

1 reference

354

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issue

6308

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page(s)

64-68

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Immune homeostasis enforced by co-localized effector and regulatory T cells

cites work

1 reference

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Identification of transcriptional regulators in the mouse immune system

20 March 2017

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Unbiased reconstruction of a mammalian transcriptional network mediating pathogen responses

20 March 2017

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Genetic and epigenetic fine mapping of causal autoimmune disease variants

20 March 2017

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A validated regulatory network for Th17 cell specification

20 March 2017

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Single-cell transcriptomics reveals bimodality in expression and splicing in immune cells

20 March 2017

1 reference

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Macrophage biology in development, homeostasis and disease

7 April 2017

1 reference

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Gene-expression profiles and transcriptional regulatory pathways that underlie the identity and diversity of mouse tissue macrophages

7 April 2017

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Single-cell analysis of mixed-lineage states leading to a binary cell fate choice.

7 April 2017

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Lineage-specific and single-cell chromatin accessibility charts human hematopoiesis and leukemia evolution

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5111631

Single-cell analysis of CD4+ T-cell differentiation reveals three major cell states and progressive acceleration of proliferation

29 September 2017

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29 September 2017

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Dissecting the multicellular ecosystem of metastatic melanoma by single-cell RNA-seq

29 September 2017

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T cell fate and clonality inference from single-cell transcriptomes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5111631

Harnessing the plasticity of CD4(+) T cells to treat immune-mediated disease

29 September 2017

1 reference

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The role of the local environment and epigenetics in shaping macrophage identity and their effect on tissue homeostasis.

29 September 2017

1 reference

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Tissue biology perspective on macrophages

29 September 2017

1 reference

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Transcriptional Heterogeneity and Lineage Commitment in Myeloid Progenitors

29 September 2017

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Single-Cell Genomics Unveils Critical Regulators of Th17 Cell Pathogenicity

29 September 2017

1 reference

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Regulation of macrophage development and function in peripheral tissues

29 September 2017

1 reference

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Effector T cell differentiation: are master regulators of effector T cells still the masters?

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5111631

A Distinct Function of Regulatory T Cells in Tissue Protection

29 September 2017

1 reference

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A Genome-wide CRISPR Screen in Primary Immune Cells to Dissect Regulatory Networks

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5111631

Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets

29 September 2017

1 reference

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Th17 cells transdifferentiate into regulatory T cells during resolution of inflammation

29 September 2017

1 reference

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Antigen- and cytokine-driven accumulation of regulatory T cells in visceral adipose tissue of lean mice

29 September 2017

1 reference

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RNA imaging. Spatially resolved, highly multiplexed RNA profiling in single cells

29 September 2017

1 reference

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Environment drives selection and function of enhancers controlling tissue-specific macrophage identities

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5111631

Tissue-resident macrophage enhancer landscapes are shaped by the local microenvironment.

29 September 2017

1 reference

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Immunogenetics. Chromatin state dynamics during blood formation

29 September 2017

1 reference

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The alarmin IL-33 promotes regulatory T-cell function in the intestine

29 September 2017

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Single-cell RNA-seq reveals dynamic paracrine control of cellular variation

29 September 2017

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Helper T cell plasticity: impact of extrinsic and intrinsic signals on transcriptomes and epigenomes

29 September 2017

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Tissue-specific signals control reversible program of localization and functional polarization of macrophages

29 September 2017

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Common genetic variants modulate pathogen-sensing responses in human dendritic cells

29 September 2017

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Innate immune activity conditions the effect of regulatory variants upon monocyte gene expression

29 September 2017

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Multiplexed ion beam imaging of human breast tumors

29 September 2017

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Conversion of danger signals into cytokine signals by hematopoietic stem and progenitor cells for regulation of stress-induced hematopoiesis

29 September 2017

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Massively parallel single-cell RNA-seq for marker-free decomposition of tissues into cell types

29 September 2017

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Transcriptome-based network analysis reveals a spectrum model of human macrophage activation.

29 September 2017

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A special population of regulatory T cells potentiates muscle repair

29 September 2017

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Deciphering molecular circuits from genetic variation underlying transcriptional responsiveness to stimuli

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5111631

Dynamic regulatory network controlling TH17 cell differentiation

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5111631

A multiply redundant genetic switch 'locks in' the transcriptional signature of regulatory T cells

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5111631

Transcription factor Foxp3 and its protein partners form a complex regulatory network

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5111631

Th17 cells are long lived and retain a stem cell-like molecular signature

29 September 2017

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Impulse control: temporal dynamics in gene transcription

29 September 2017

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Inflammatory signals regulate hematopoietic stem cells

29 September 2017

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Control of inducible gene expression by signal-dependent transcriptional elongation

29 September 2017

1 reference

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Myeloid lineage commitment from the hematopoietic stem cell

29 September 2017

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Systems biology approaches identify ATF3 as a negative regulator of Toll-like receptor 4.

29 September 2017

1 reference

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Control of the inheritance of regulatory T cell identity by a cis element in the Foxp3 locus

29 September 2017

1 reference

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PPAR-γ is a major driver of the accumulation and phenotype of adipose tissue Treg cells

2 June 2018

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Densely interconnected transcriptional circuits control cell states in human hematopoiesis

2 June 2018

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Epigenetic instability of cytokine and transcription factor gene loci underlies plasticity of the T helper 17 cell lineage

2 June 2018

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The plasticity and stability of regulatory T cells.

2 June 2018

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Microglia development follows a stepwise program to regulate brain homeostasis.

21 January 2018

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Gene-specific control of inflammation by TLR-induced chromatin modifications

21 January 2018

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Targeted reconstruction of T cell receptor sequence from single cell RNA-seq links CDR3 length to T cell differentiation state

21 January 2018

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