Epigenetic functions of smchd1 repress gene clusters on the inactive X chromosome and on autosomes (Q28590537)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23754746%20AND%20SRC:MED&resulttype=core&format=json

2 March 2020

title

Epigenetic functions of smchd1 repress gene clusters on the inactive X chromosome and on autosomes (English)

2 references

31 January 2017

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23754746%20AND%20SRC:MED&resulttype=core&format=json

2 March 2020

main subject

DNA methyltransferase 3B

1 reference

SMC hinge domain containing 1

GOA release 2020-03-11

1 reference

GOA release 2020-03-11

author

Anne-Valerie Gendrel

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23754746%20AND%20SRC:MED&resulttype=core&format=json

2 March 2020

Amy Y Tang

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23754746%20AND%20SRC:MED&resulttype=core&format=json

2 March 2020

Tatyana Nesterova

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23754746%20AND%20SRC:MED&resulttype=core&format=json

2 March 2020

John Greally

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23754746%20AND%20SRC:MED&resulttype=core&format=json

2 March 2020

Neil Brockdorff

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23754746%20AND%20SRC:MED&resulttype=core&format=json

2 March 2020

7

Edith Heard

2 references

31 January 2017

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23754746%20AND%20SRC:MED&resulttype=core&format=json

2 March 2020

4

Jonathan Godwin

2 references

31 January 2017

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23754746%20AND%20SRC:MED&resulttype=core&format=json

2 March 2020

author name string

Masako Suzuki

3

2 references

31 January 2017

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23754746%20AND%20SRC:MED&resulttype=core&format=json

2 March 2020

language of work or name

English

0 references

publication date

10 June 2013

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23754746%20AND%20SRC:MED&resulttype=core&format=json

Molecular and Cellular Biology

2 March 2020

published in

2 references

31 January 2017

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23754746%20AND%20SRC:MED&resulttype=core&format=json

2 March 2020

volume

33

2 references

31 January 2017

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23754746%20AND%20SRC:MED&resulttype=core&format=json

2 March 2020

issue

16

2 references

31 January 2017

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2 March 2020

page(s)

3150-3165

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23754746%20AND%20SRC:MED&resulttype=core&format=json

describes a project that uses

2 March 2020

limma

object named as

limma

2 references

22 June 2022

https://europepmc.org/article/PMC/3753908

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

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Purification of proteins associated with specific genomic Loci

17 March 2017

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SmcHD1, containing a structural-maintenance-of-chromosomes hinge domain, has a critical role in X inactivation

17 March 2017

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17 March 2017

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Lsh controls silencing of the imprinted Cdkn1c gene

17 March 2017

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Gamma protocadherins are required for synaptic development in the spinal cord

17 March 2017

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Essential role for de novo DNA methyltransferase Dnmt3a in paternal and maternal imprinting

17 March 2017

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17 March 2017

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Gamma protocadherins are required for survival of spinal interneurons

17 March 2017

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Comparative DNA sequence analysis of mouse and human protocadherin gene clusters

17 March 2017

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Molecular evidence for a relationship between LINE-1 elements and X chromosome inactivation: the Lyon repeat hypothesis

17 March 2017

1 reference

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Disruption of the mouse necdin gene results in early post-natal lethality

17 March 2017

1 reference

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A mouse model for Prader-Willi syndrome imprinting-centre mutations

17 March 2017

1 reference

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Digenic inheritance of an SMCHD1 mutation and an FSHD-permissive D4Z4 allele causes facioscapulohumeral muscular dystrophy type 2

17 March 2017

1 reference

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Spatial partitioning of the regulatory landscape of the X-inactivation centre

7 April 2017

1 reference

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Cohesins functionally associate with CTCF on mammalian chromosome arms

7 April 2017

1 reference

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Cohesin mediates transcriptional insulation by CCCTC-binding factor

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753908

CTCF/cohesin-mediated DNA looping is required for protocadherin α promoter choice

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753908

Smchd1-dependent and -independent pathways determine developmental dynamics of CpG island methylation on the inactive X chromosome.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753908

Involvement of a GHKL ATPase in RNA-directed DNA methylation in Arabidopsis thaliana

29 September 2017

1 reference

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MORC family ATPases required for heterochromatin condensation and gene silencing.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753908

Role of CCCTC binding factor (CTCF) and cohesin in the generation of single-cell diversity of protocadherin-α gene expression

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753908

Identification of CTCF as a master regulator of the clustered protocadherin genes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753908

Genomic imprinting: recognition and marking of imprinted loci

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753908

GMI1, a structural-maintenance-of-chromosomes-hinge domain-containing protein, is involved in somatic homologous recombination in Arabidopsis

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753908

Development and applications of single-cell transcriptome analysis

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753908

LSH and G9a/GLP complex are required for developmentally programmed DNA methylation

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753908

Comparison of sequencing-based methods to profile DNA methylation and identification of monoallelic epigenetic modifications.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753908

LINE-1 activity in facultative heterochromatin formation during X chromosome inactivation

29 September 2017

1 reference

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Efficiency of Xist-mediated silencing on autosomes is linked to chromosomal domain organisation

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753908

Clustered protocadherin family

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753908

A structural-maintenance-of-chromosomes hinge domain-containing protein is required for RNA-directed DNA methylation.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753908

Relationship between DNA methylation states and transcription of individual isoforms encoded by the protocadherin-alpha gene cluster

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753908

Protocadherin family: diversity, structure, and function

29 September 2017

1 reference

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At the heart of the chromosome: SMC proteins in action

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753908

An N-ethyl-N-nitrosourea screen for genes involved in variegation in the mouse

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753908

Establishment and maintenance of DNA methylation patterns in mouse Ndn: implications for maintenance of imprinting in target genes of the imprinting center.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753908

De novo deletions of SNRPN exon 1 in early human and mouse embryos result in a paternal to maternal imprint switch

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753908

Differential distribution of long and short interspersed element sequences in the mouse genome: chromosome karyotyping by fluorescence in situ hybridization

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753908

Zp3-cre, a transgenic mouse line for the activation or inactivation of loxP-flanked target genes specifically in the female germ line

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753908

Role of late replication timing in the silencing of X-linked genes.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753908

Human inactive X chromosome is compacted through a PRC2-independent SMCHD1-HBiX1 pathway

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753908

CTCF is required for neural development and stochastic expression of clustered Pcdh genes in neurons.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753908

Genomic imprinting: the emergence of an epigenetic paradigm.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753908

Targets and dynamics of promoter DNA methylation during early mouse development.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753908

Mechanisms of imprinting of the Prader-Willi/Angelman region.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753908

Split single-cell RT-PCR analysis of Purkinje cells.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753908

Allelic gene regulation of Pcdh-alpha and Pcdh-gamma clusters involving both monoallelic and biallelic expression in single Purkinje cells.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753908

Monoallelic yet combinatorial expression of variable exons of the protocadherin-alpha gene cluster in single neurons.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753908

Dnmt3L and the establishment of maternal genomic imprints.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753908

The SNRPN promoter is not required for genomic imprinting of the Prader-Willi/Angelman domain in mice.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753908

The Prader-Willi syndrome imprinting center activates the paternally expressed murine Ube3a antisense transcript but represses paternal Ube3a.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753908

Disruption of the mouse Necdin gene results in hypothalamic and behavioral alterations reminiscent of the human Prader-Willi syndrome.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753908

Escape from gene silencing in ICF syndrome: evidence for advanced replication time as a major determinant.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753908

X Inactivation in the Mouse Embryo Deficient for Dnmt1: Distinct Effect of Hypomethylation on Imprinted and Random X Inactivation

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753908

Imprinted methylation and its effect on expression of the mouse Zfp127 gene

27 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23754746

12 December 2020

inferred from PubMed ID database lookup

The protocadherin-alpha family is involved in axonal coalescence of olfactory sensory neurons into glomeruli of the olfactory bulb in mouse

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23754746

12 December 2020

inferred from PubMed ID database lookup

Identifiers

2 references

31 January 2017

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23754746%20AND%20SRC:MED&resulttype=core&format=json

release_wzllfo7thnbnxh4v3gijf2n4g4

2 March 2020

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/wzllfo7thnbnxh4v3gijf2n4g4

24 November 2022

mapped directly with Wikidata item

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23754746%20AND%20SRC:MED&resulttype=core&format=json

2 March 2020

2 references

31 January 2017