CHiCAGO: robust detection of DNA looping interactions in Capture Hi-C data (Q28601222)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27306882%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

title

CHiCAGO: robust detection of DNA looping interactions in Capture Hi-C data (English)

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14 March 2020

1

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Steven W Wingett

3

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14 March 2020

Andrew Dimond

5

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14 March 2020

Daniel R Zerbino

7

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Biola M. Javierre

9

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Cameron S. Osborne

10

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Peter Fraser

11

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14 March 2020

Mikhail Spivakov

12

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author name string

Paula Freire-Pritchett

2

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14 March 2020

Csilla Várnai

4

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14 March 2020

Vincent Plagnol

6

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14 March 2020

Stefan Schoenfelder

8

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language of work or name

English

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publication date

15 June 2016

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14 March 2020

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volume

17

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issue

1

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14 March 2020

page(s)

127

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describes a project that uses

14 March 2020

DESeq2

object named as

DESeq2

DESeq

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

exact match

https://scigraph.springernature.com/pub.10.1186/s13059-016-0992-2

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Diffusion-driven looping provides a consistent framework for chromatin organization

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7 April 2017

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Cajal bodies are linked to genome conformation

29 September 2017

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4C-ker: A Method to Reproducibly Identify Genome-Wide Interactions Captured by 4C-Seq Experiments

29 September 2017

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29 September 2017

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A hidden Markov random field-based Bayesian method for the detection of long-range chromosomal interactions in Hi-C data.

29 September 2017

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Polycomb repressive complex PRC1 spatially constrains the mouse embryonic stem cell genome

29 September 2017

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Genome-wide mapping of promoter-anchored interactions with close to single-enhancer resolution

29 September 2017

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FourCSeq: analysis of 4C sequencing data

29 September 2017

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Mapping long-range promoter contacts in human cells with high-resolution capture Hi-C.

29 September 2017

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29 September 2017

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Capture Hi-C identifies the chromatin interactome of colorectal cancer risk loci

29 September 2017

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Unbiased analysis of potential targets of breast cancer susceptibility loci by Capture Hi-C.

29 September 2017

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29 September 2017

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29 September 2017

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29 September 2017

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29 September 2017

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29 September 2017

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29 September 2017

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29 September 2017

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29 September 2017

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29 September 2017

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29 September 2017

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29 September 2017

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29 September 2017

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29 September 2017

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29 September 2017

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Disentangling the Effects of Colocalizing Genomic Annotations to Functionally Prioritize Non-coding Variants within Complex-Trait Loci.

29 September 2017

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Probabilistic modeling of Hi-C contact maps eliminates systematic biases to characterize global chromosomal architecture.

3 June 2018

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Chromatin position effects assayed by thousands of reporters integrated in parallel.

21 January 2018

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Dynamic regulation of genome-wide pre-mRNA splicing and stress tolerance by the Sm-like protein LSm5 in Arabidopsis

21 January 2018

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A Simplex Method for Function Minimization

21 January 2018

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Exploring long-range genome interactions using the WashU Epigenome Browser

21 January 2018

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Stratified false discovery control for large-scale hypothesis testing with application to genome-wide association studies

21 January 2018

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False discovery control with p-value weighting

21 January 2018

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https://api.crossref.org/works/10.1186%2FS13059-016-0992-2

10.1186/S13059-016-0992-2

21 January 2018

Identifiers

DOI

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14 March 2020

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14 March 2020

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