Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation (Q28603064)

42

Francoise Thibaud-Nissen

0 references

Michael DiCuccio

52

Michael DiCuccio

0 references

Michael Murphy

Michael R Murphy

32

0 references

Eric Cox

Eric Cox

18

0 references

Vinita S Joardar

Vinita S Joardar

26

0 references

Daniel H Haft

23

Daniel Haft

0 references

Kim D. Pruitt

55

Kim D Pruitt

0 references

Conrad Lamoraal Schoch

38

Conrad Schoch

0 references

Donna R. Maglott

29

Donna Maglott

0 references

Melissa Landrum

49

Melissa J Landrum

0 references

author name string

Nuala A O'Leary

1

0 references

Mathew W Wright

2

0 references

J Rodney Brister

3

0 references

Stacy Ciufo

4

0 references

Diana Haddad

5

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Rich McVeigh

6

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Bhanu Rajput

7

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Barbara Robbertse

8

0 references

Brian Smith-White

9

0 references

Danso Ako-Adjei

10

0 references

Alexander Astashyn

11

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Azat Badretdin

12

0 references

Yiming Bao

13

0 references

Olga Blinkova

14

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Vyacheslav Brover

15

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Vyacheslav Chetvernin

16

0 references

Jinna Choi

17

0 references

Olga Ermolaeva

19

0 references

Catherine M Farrell

20

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Tamara Goldfarb

21

0 references

Tripti Gupta

22

0 references

Eneida Hatcher

24

0 references

Wratko Hlavina

25

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Vamsi K Kodali

27

0 references

Wenjun Li

28

0 references

Patrick Masterson

30

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Kelly M McGarvey

31

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Kathleen O'Neill

33

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Shashikant Pujar

34

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Sanjida H Rangwala

35

0 references

Daniel Rausch

36

0 references

Lillian D Riddick

37

0 references

Andrei Shkeda

39

0 references

Susan S Storz

40

0 references

Hanzhen Sun

41

0 references

Igor Tolstoy

43

0 references

Raymond E Tully

44

0 references

Anjana R Vatsan

45

0 references

Craig Wallin

46

0 references

David Webb

47

0 references

Wendy Wu

48

0 references

Avi Kimchi

50

0 references

Michael DiCuccio

52

0 references

Paul Kitts

53

0 references

Terence D Murphy

SCIENTIFIC STANDARDS. Promoting an open research culture

54

0 references

language of work or name

English

0 references

publication date

4 January 2016

0 references

published in

Nucleic Acids Research

0 references

volume

44

0 references

page(s)

D733-45

0 references

issue

D1

0 references

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702849

Whole-genome analyses resolve early branches in the tree of life of modern birds

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702849

Comparative genomics reveals insights into avian genome evolution and adaptation

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702849

Rfam 12.0: updates to the RNA families database

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702849

The rise of regulatory RNA

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702849

PTENα, a PTEN isoform translated through alternative initiation, regulates mitochondrial function and energy metabolism

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702849

The Global Invertebrate Genomics Alliance (GIGA): developing community resources to study diverse invertebrate genomes

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702849

miRBase: annotating high confidence microRNAs using deep sequencing data

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702849

Current status and new features of the Consensus Coding Sequence database

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702849

Gene expression regulation by upstream open reading frames and human disease

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702849

A secreted PTEN phosphatase that enters cells to alter signaling and survival

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702849

The oyster genome reveals stress adaptation and complexity of shell formation

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702849

Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702849

NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702849

Insights into social insects from the genome of the honeybee Apis mellifera

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702849

The human and mouse replication-dependent histone genes

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702849

The Genome Sequence of the Malaria Mosquito Anopheles gambiae

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702849

Initial sequencing and analysis of the human genome

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702849

Syncytin is a captive retroviral envelope protein involved in human placental morphogenesis

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702849

The i5K Initiative: Advancing Arthropod Genomics for Knowledge, Human Health, Agriculture, and the Environment

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702849

UniProt: a hub for protein information

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702849

Animal Biodiversity: An Outline of Higher-level Classification and Survey of Taxonomic Richness (Addenda 2013)

7 April 2017

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702849

7 April 2017

https://api.crossref.org/works/10.1093%2FNAR%2FGKV1189

The NIH Roadmap Epigenomics Mapping Consortium

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702849

De novo identification of repeat families in large genomes

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702849

GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702849

Long non-coding RNA HOTAIR: A novel oncogene (Review).

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702849

Mouse genome annotation by the RefSeq project

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702849

RefSeq curation and annotation of antizyme and antizyme inhibitor genes in vertebrates

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702849

ZFIN, The zebrafish model organism database: Updates and new directions

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702849

International Society of Human and Animal Mycology (ISHAM)-ITS reference DNA barcoding database--the quality controlled standard tool for routine identification of human and animal pathogenic fungi

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702849

Phenotypic and molecular diversity of Meyerozyma guilliermondii strains isolated from food and other environmental niches, hints for an incipient speciation

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702849

A Comprehensive, Automatically Updated Fungal ITS Sequence Dataset for Reference-Based Chimera Control in Environmental Sequencing Efforts

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702849

Nectar sugars and bird visitation define a floral niche for basidiomycetous yeast on the Canary Islands

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702849

Update on RefSeq microbial genomes resources

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702849

Identification and nomenclature of the genus Penicillium

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702849

Taxonomic reorganization of the family Bornaviridae

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702849

NCBI viral genomes resource

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702849

Type material in the NCBI Taxonomy Database.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702849

HIV-1, human interaction database: current status and new features

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702849

Genenames.org: the HGNC resources in 2015

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702849

Improvements to pairwise sequence comparison (PASC): a genome-based web tool for virus classification

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702849

Schistosomes and snails: a molecular encounter

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702849

Finding needles in haystacks: linking scientific names, reference specimens and molecular data for Fungi

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702849

Modeling genomic regulatory networks with big data

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702849

Analysis of the human tissue-specific expression by genome-wide integration of transcriptomics and antibody-based proteomics

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702849

Virus Variation Resource--recent updates and future directions

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702849

BACE1 as a therapeutic target in Alzheimer's disease: rationale and current status

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702849

A subset of histone H2B genes produces polyadenylated mRNAs under a variety of cellular conditions

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702849

Integrative annotation of chromatin elements from ENCODE data

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702849

Microbial virus genome annotation-mustering the troops to fight the sequence onslaught

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702849

PAirwise Sequence Comparison (PASC) and its application in the classification of filoviruses

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702849

A quantitative atlas of polyadenylation in five mammals

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702849

Towards Viral Genome Annotation Standards, Report from the 2010 NCBI Annotation Workshop

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702849

PhyloCSF: a comparative genomics method to distinguish protein coding and non-coding regions

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702849

Uniformity of rotavirus strain nomenclature proposed by the Rotavirus Classification Working Group (RCWG)

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702849

Locus Reference Genomic sequences: an improved basis for describing human DNA variants.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702849

CAGE: cap analysis of gene expression

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702849

A draft sequence for the genome of the domesticated silkworm (Bombyx mori).

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702849

Gene identification in prokaryotic genomes, phages, metagenomes, and EST sequences with GeneMarkS suite

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702849

Using the whole-genome sequence to characterize and name human adenoviruses

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702849

Antimicrobial Peptides in Health and Disease

20 June 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKV1189

Ratification vote on taxonomic proposals to the International Committee on Taxonomy of Viruses (2015).

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKV1189

Past, present, and future of arenavirus taxonomy.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKV1189

Filovirus RefSeq entries: evaluation and selection of filovirus type variants, type sequences, and names

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKV1189

21 January 2018

Identifiers

DOI

10.1093/NAR/GKV1189

1 reference

journals/nar/OLearyWBCHMRRSA16

653662

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

653662

1 reference

1 reference

1 reference