Precise mapping and dynamics of tRNA-derived fragments (tRFs) in the development of Triops cancriformis (tadpole shrimp) (Q28647144)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26168920%20AND%20SRC:MED&resulttype=core&format=json

14 June 2020

author name string

Yuka Hirose

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26168920%20AND%20SRC:MED&resulttype=core&format=json

14 June 2020

Kahori T Ikeda

2

1 reference

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14 June 2020

Emiko Noro

3

1 reference

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14 June 2020

Kiriko Hiraoka

4

1 reference

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14 June 2020

Masaru Tomita

5

1 reference

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14 June 2020

language of work or name

English

0 references

publication date

14 July 2015

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published in

BMC Genetics

1 reference

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14 June 2020

volume

16

1 reference

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14 June 2020

issue

1

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page(s)

83

1 reference

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Creative Commons Attribution 4.0 International

14 June 2020

copyright license

start time

14 July 2015

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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tRNA fragments in human health and disease

17 March 2017

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tRNA gene diversity in the three domains of life

17 March 2017

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Armless mitochondrial tRNAs in Enoplea (Nematoda)

17 March 2017

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Transfer RNA-derived fragments: origins, processing, and functions

17 March 2017

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17 March 2017

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Tri-split tRNA is a transfer RNA made from 3 transcripts that provides insight into the evolution of fragmented tRNAs in archaea

17 March 2017

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Small ncRNA transcriptome analysis from Aspergillus fumigatus suggests a novel mechanism for regulation of protein synthesis

17 March 2017

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The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs

17 March 2017

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MicroRNAs: small RNAs with a big role in gene regulation

17 March 2017

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MicroRNAs: genomics, biogenesis, mechanism, and function

17 March 2017

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17 March 2017

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Cluster analysis and display of genome-wide expression patterns

21 January 2018

1 reference

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tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence

17 March 2017

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17 March 2017

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Java Treeview--extensible visualization of microarray data

21 January 2018

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tRNA biology charges to the front

7 April 2017

1 reference

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Disrupted tRNA Genes and tRNA Fragments: A Perspective on tRNA Gene Evolution.

7 April 2017

1 reference

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Meta-analysis of tRNA derived RNA fragments reveals that they are evolutionarily conserved and associate with AGO proteins to recognize specific RNA targets.

3 June 2018

1 reference

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The human Piwi protein Hiwi2 associates with tRNA-derived piRNAs in somatic cells.

3 June 2018

1 reference

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tRNAs as regulators of biological processes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4501094

Losing the stem-loop structure from metazoan mitochondrial tRNAs and co-evolution of interacting factors

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4501094

Putative anticodons in mitochondrial tRNA sidearm loops: Pocketknife tRNAs?

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4501094

Pocketknife tRNA hypothesis: anticodons in mammal mitochondrial tRNA side-arm loops translate proteins?

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4501094

CLP1 links tRNA metabolism to progressive motor-neuron loss

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4501094

Description of plant tRNA-derived RNA fragments (tRFs) associated with argonaute and identification of their putative targets.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4501094

A Tetrahymena Piwi bound to mature tRNA 3' fragments activates the exonuclease Xrn2 for RNA processing in the nucleus

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4501094

The origin of the tRNA molecule: Independent data favor a specific model of its evolution

3 June 2018

1 reference

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Angiogenin-induced tRNA fragments inhibit translation initiation

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4501094

Discovery of permuted and recently split transfer RNAs in Archaea

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4501094

The presence in tRNA molecule sequences of the double hairpin, an evolutionary stage through which the origin of this molecule is thought to have passed

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4501094

Permuted tRNA genes in the nuclear and nucleomorph genomes of photosynthetic eukaryotes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4501094

Improved tRNA prediction in the American house dust mite reveals widespread occurrence of extremely short minimal tRNAs in acariform mites

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4501094

A novel class of small RNAs: tRNA-derived RNA fragments (tRFs).

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4501094

Filtering of deep sequencing data reveals the existence of abundant Dicer-dependent small RNAs derived from tRNAs

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4501094

Transfer RNA genes in pieces

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4501094

3 June 2018

piRNAs in the germ line

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4501094

Complete mitochondrial DNA sequence of a tadpole shrimp (Triops cancriformis) and analysis of museum samples

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4501094

Comprehensive analysis of archaeal tRNA genes reveals rapid increase of tRNA introns in the order thermoproteales

3 June 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12863-015-0245-5

Disrupted tRNA gene diversity and possible evolutionary scenarios.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12863-015-0245-5

Nanoarchaeum equitans creates functional tRNAs from separate genes for their 5'- and 3'-halves.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12863-015-0245-5

Permuted tRNA genes expressed via a circular RNA intermediate in Cyanidioschyzon merolae.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12863-015-0245-5

Starvation-induced cleavage of the tRNA anticodon loop in Tetrahymena thermophila

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12863-015-0245-5

The RNA methyltransferase Dnmt2 is required for efficient Dicer-2-dependent siRNA pathway activity in Drosophila

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12863-015-0245-5

The rat mitochondrial Ori L encodes a novel small RNA resembling an ancestral tRNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12863-015-0245-5

Biological evidence for the world's smallest tRNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12863-015-0245-5

A comparison among the models proposed to explain the origin of the tRNA molecule: A synthesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12863-015-0245-5

Identification of highly-disrupted tRNA genes in nuclear genome of the red alga, Cyanidioschyzon merolae 10D.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4501094

Stressing out over tRNA cleavage

27 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26168920

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/S12863-015-0245-5

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26168920%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

14 June 2020

1026877282

0 references

1 reference

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26168920%20AND%20SRC:MED&resulttype=core&format=json

14 June 2020

PubMed publication ID

26168920

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26168920%20AND%20SRC:MED&resulttype=core&format=json