De novo backbone and sequence design of an idealized alpha/beta-barrel protein: evidence of stable tertiary structure (Q30165027)

9 June 2017

De novo backbone and sequence design of an idealized alpha/beta-barrel protein: evidence of stable tertiary structure (English)

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9 June 2017

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Offredi F

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9 June 2017

Dubail F

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9 June 2017

Kischel P

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9 June 2017

Sarinski K

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9 June 2017

Stern AS

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9 June 2017

Van de Weerdt C

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9 June 2017

Hoch JC

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9 June 2017

Prosperi C

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9 June 2017

François JM

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9 June 2017

Mayo SL

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9 June 2017

Martial JA

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9 June 2017

language of work or name

English

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publication date

1 January 2003

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Journal of Molecular Biology

9 June 2017

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9 June 2017

325

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9 June 2017

1

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9 June 2017

163-174

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A surprising simplicity to protein folding.

9 June 2017

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https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901206-8

Prediction of protein-folding mechanisms from free-energy landscapes derived from native structures

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901206-8

Native topology or specific interactions: what is more important for protein folding?

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901206-8

The sequences of small proteins are not extensively optimized for rapid folding by natural selection

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901206-8

Protein folding: the endgame

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901206-8

De novo design and structural characterization of proteins and metalloproteins

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901206-8

7 January 2021

Proteins from scratch.

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https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901206-8

Tertiary templates for proteins. Use of packing criteria in the enumeration of allowed sequences for different structural classes

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901206-8

Conformation of amino acid side-chains in proteins

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901206-8

De novo protein design: fully automated sequence selection

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901206-8

In silico design for protein stabilization

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901206-8

Protein design automation

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901206-8

Side-chain and backbone flexibility in protein core design

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901206-8

Probing the role of packing specificity in protein design

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901206-8

High-resolution protein design with backbone freedom

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901206-8

Repacking protein cores with backbone freedom: structure prediction for coiled coils

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901206-8

Automatic protein design with all atom force-fields by exact and heuristic optimization

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901206-8

New strategies in protein design

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901206-8

Design, structure and stability of a hyperthermophilic protein variant

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901206-8

Computational protein design

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901206-8

The dead-end elimination theorem and its use in protein side-chain positioning

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901206-8

Efficient rotamer elimination applied to protein side-chains and related spin glasses

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901206-8

Energy functions for protein design

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901206-8

De novo protein design: towards fully automated sequence selection

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901206-8

Coupling backbone flexibility and amino acid sequence selection in protein design

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901206-8

De novo design of the hydrophobic core of ubiquitin

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901206-8

Solution structure of alpha t alpha, a helical hairpin peptide of de novo design

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901206-8

Solution structure and dynamics of a de novo designed three-helix bundle protein

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901206-8

Spectroscopic investigation of structure in octarellin (a de novo protein designed to adopt the α/β-barred packing)

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901206-8

Synthesis, purification and initial structural characterization of octarellin, a de novo polypeptide modelled on the alpha/beta-barrel proteins.

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901206-8

De novo design and creation of a stable artificial protein.

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901206-8

Characteristics of a de novo designed protein

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901206-8

Second-generation octarellins: two new de novo (beta/alpha)8 polypeptides designed for investigating the influence of beta-residue packing on the alpha/beta-barrel structure stability

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901206-8

Cooperative deformation of a de novo designed protein

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901206-8

Recurrent alpha beta loop structures in TIM barrel motifs show a distinct pattern of conserved structural features.

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901206-8

Assessing protein structures with a non-local atomic interaction energy.

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901206-8

Novel knowledge-based mean force potential at atomic level

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901206-8

Recursive PCR: a novel technique for total gene synthesis

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901206-8

Computed circular dichroism spectra for the evaluation of protein conformation

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901206-8

Aromatic Contributions To Circular Dichroism Spectra Of Protein

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901206-8

How molten is the molten globule?

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901206-8

De novo protein design: from molten globules to native-like states

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901206-8

Structure of a protein G helix variant suggests the importance of helix propensity and helix dipole interactions in protein design

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901206-8

Automated design of the surface positions of protein helices

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901206-8

Rapid protein-folding assay using green fluorescent protein

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901206-8

Directed evolution of new catalytic activity using the alpha/beta-barrel scaffold

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901206-8

Analysis and prediction of the packing of alpha-helices against a beta-sheet in the tertiary structure of globular proteins

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901206-8

Principles determining the structure of beta-sheet barrels in proteins. I. A theoretical analysis

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901206-8

Principles determining the structure of beta-sheet barrels in proteins. II. The observed structures

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901206-8

Structural principles of parallel beta-barrels in proteins

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901206-8

Structural principles of alpha/beta barrel proteins: the packing of the interior of the sheet

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901206-8

The design of idealized alpha/beta-barrels: analysis of beta-sheet closure requirements.

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901206-8

DREIDING: a generic force field for molecular simulations

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901206-8

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901206-8

Typical interaction patterns in alphabeta and betaalpha turn motifs.

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901206-8

Pairwise calculation of protein solvent-accessible surface areas

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901206-8

Solvent-accessible surfaces of proteins and nucleic acids

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901206-8

Backbone-dependent rotamer library for proteins. Application to side-chain prediction

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901206-8

All in one: a highly detailed rotamer library improves both accuracy and speed in the modelling of sidechains by dead-end elimination

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901206-8

Codon usage tabulated from the international DNA sequence databases

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901206-8

Improved refolding of an immobilized fusion protein.

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901206-8

Resolution of the fluorescence equilibrium unfolding profile of trp aporepressor using single tryptophan mutants

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901206-8

Acid-induced molten globule state of a fully active mutant of human interleukin-6

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901206-8

CONTIN: A general purpose constrained regularization program for inverting noisy linear algebraic and integral equations

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901206-8

10.1016/S0022-2836(02)01206-8

7 January 2021

Identifiers

DOI

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9 June 2017

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