Protein folding: the endgame (Q30427987)

21 June 2017

1 reference

title

Protein folding: the endgame (English)

1 reference

21 June 2017

0 references

2

Gerstein M

1 reference

21 June 2017

1

Levitt M

1 reference

21 June 2017

Huang E

3

1 reference

21 June 2017

Subbiah S

series ordinal

4

1 reference

21 June 2017

Tsai J

series ordinal

5

1 reference

21 June 2017

publication date

1 January 1997

1 reference

Annual Review of Biochemistry

21 June 2017

number of pages

31

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based on heuristic

inferred from page(s)

published in

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21 June 2017

volume

66

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21 June 2017

page(s)

549-579

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Formation of a molten globule intermediate early in the kinetic folding pathway of apomyoglobin

21 June 2017

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11 October 2022

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P22 Arc repressor: folding kinetics of a single-domain, dimeric protein

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Elbow motion in the immunoglobulins involves a molecular ball-and-socket joint

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Exploring conformational space with a simple lattice model for protein structure

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Homology modelling of annexin I: implicit solvation improves side-chain prediction and combination of evaluation criteria allows recognition of different types of conformational error

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11 October 2022

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Packing interactions in the apomyglobin folding intermediate

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11 October 2022

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The use of side-chain packing methods in modeling bacteriophage repressor and cro proteins

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11 October 2022

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Fast-folding experiments and the topography of protein folding energy landscapes

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11 October 2022

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LINUS: a hierarchic procedure to predict the fold of a protein.

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11 October 2022

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A Method to Identify Protein Sequences That Fold into a Known Three-Dimensional Structure

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11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Phase diagram for acidic conformational states of apomyoglobin

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11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Compact intermediate states in protein folding.

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11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Volume changes on protein folding.

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11 October 2022

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Protein folding. Effect of packing density on chain conformation

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11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Analysis of protein loop closure

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11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

The volume of atoms on the protein surface: calculated from simulation, using Voronoi polyhedra

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11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Intrinsic stability of individual alpha helices modulates structure and stability of the apomyoglobin molten globule form

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11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

‘Molten‐globule state’: a compact form of globular proteins with mobile side‐chains

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Prediction of the folding pathways and structure of the GCN4 leucine zipper

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Evidence on close packing and cavities in proteins.

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Packing of α-helices: Geometrical constraints and contact areas

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Testing homology modeling on mutant proteins: predicting structural and thermodynamic effects in the Ala98-->Val mutants of T4 lysozyme

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

A new force field for molecular mechanical simulation of nucleic acids and proteins

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Origins of structure in globular proteins

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

A simple protein folding algorithm using a binary code and secondary structure constraints.

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Direct NMR evidence for an intermediate preceding the rate-limiting step in the unfolding of ribonuclease A

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Volume changes in protein evolution.

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Areas, volumes, packing and protein structure

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Fast and simple Monte Carlo algorithm for side chain optimization in proteins: application to model building by homology

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Mean-field minimization methods for biological macromolecules

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Slow-folding kinetics of ribonuclease-A by volume change and circular dichroism: evidence for two independent reactions

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

The molten globule state as a clue for understanding the folding and cooperativity of globular-protein structure.

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

A computer model to dynamically simulate protein folding: studies with crambin.

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Folding of chymotrypsin inhibitor 2. 1. Evidence for a two-state transition

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

A new computational model for protein folding based on atomic solvation

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Volume changes of the molten globule transitions of horse heart ferricytochrome c: a thermodynamic cycle

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Hydrophobic interaction between globin helices

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Folding and stability of a tryptophan-containing mutant of ubiquitin.

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Using a hydrophobic contact potential to evaluate native and near-native folds generated by molecular dynamics simulations

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Calculating three-dimensional changes in protein structure due to amino-acid substitutions: the variable region of immunoglobulins

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Application of a self-consistent mean field theory to predict protein side-chains conformation and estimate their conformational entropy

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Binary patterning of polar and nonpolar amino acids in the sequences and structures of native proteins

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Tertiary templates for proteins. Use of packing criteria in the enumeration of allowed sequences for different structural classes

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Evidence for a molten globule-like transition state in protein folding from determination of activation volumes

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Folding protein alpha-carbon chains into compact forms by Monte Carlo methods

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Stein and Moore Award address. The molten globule intermediate of apomyoglobin and the process of protein folding

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Structure and dynamics of the acid-denatured molten globule state of alpha-lactalbumin: a two-dimensional NMR study

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

An analysis of packing in the protein folding problem

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Characterizing transition states in protein folding: an essential step in the puzzle

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Van der waals picture of liquids, solids, and phase transformations

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Studies on protein stability with T4 lysozyme

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

The origins of protein secondary structure. Effects of packing density and hydrogen bonding studied by a fast conformational search

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Extremely rapid protein folding in the absence of intermediates

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Alternative packing arrangements in the hydrophobic core of λrepresser

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Compact state of a protein molecule with pronounced small-scale mobility: bovine alpha-lactalbumin

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Cold denaturation of the molten globule states of apomyoglobin and a profile for protein folding

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Detection, delineation, measurement and display of cavities in macromolecular structures

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Prediction of protein structure by evaluation of sequence-structure fitness. Aligning sequences to contact profiles derived from three-dimensional structures

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Solvent-accessible surfaces of proteins and nucleic acids

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Hydrogen bonding in globular proteins

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Identification of native protein folds amongst a large number of incorrect models. The calculation of low energy conformations from potentials of mean force

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Solvent effects and polar interactions in the structural stability and dynamics of globular proteins

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Theory of cooperative transitions in protein molecules. II. Phase diagram for a protein molecule in solution

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Engineering thermostability: lessons from thermophilic proteins

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Vibrational Raman optical activity of alpha-lactalbumin: comparison with lysozyme, and evidence for native tertiary folds in molten globule states

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Some factors in the interpretation of protein denaturation

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Discriminating compact nonnative structures from the native structure of globular proteins

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Why do globular proteins fit the limited set of folding patterns?

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

A new approach to protein fold recognition

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Principles of protein-protein interactions

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Side-chain prediction by neural networks and simulated annealing optimization.

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Alignment of 700 globin sequences: extent of amino acid substitution and its correlation with variation in volume

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

A sequential model of nucleation-dependent protein folding: Kinetic studies of ribonuclease A

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Internal cavities and buried waters in globular proteins.

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

A protein dissection study of a molten globule

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

An evolutionary approach to folding small alpha-helical proteins that uses sequence information and an empirical guiding fitness function

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Evaluation of protein models by atomic solvation preference.

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

The nature of protein folding pathways: the classical versus the new view

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Probing the stability of a partly folded apomyoglobin intermediate by site-directed mutagenesis

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Structural characterization of folding intermediates in cytochrome c by H-exchange labelling and proton NMR.

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Kinetic traps in lysozyme folding

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Partially folded states of proteins: characterization by X-ray scattering

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Structural invariants in protein folding

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Volumetric properties of proteins and their analogs in diluted water solutions. 1. Partial volumes of amino acids at 15-55 degrees C

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Compressibility-structure relationship of globular proteins.

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

A native tertiary interaction stabilizes the A state of cytochrome c

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

A method to configure protein side-chains from the main-chain trace in homology modelling

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Rapid formation of secondary structure framework in protein folding studied by stopped-flow circular dichroism

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Construction of side-chains in homology modelling. Application to the C-terminal lobe of rhizopuspepsin

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Predicting the helix packing of globular proteins by self-correcting distance geometry

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Intermediates in the folding reactions of small proteins

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

The complexity and accuracy of discrete state models of protein structure

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Hydrophobic core repacking and aromatic-aromatic interaction in the thermostable mutant of T4 lysozyme Ser 117-->Phe

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Calculation of molecular volumes and areas for structures of known geometry.

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Comparison of conformational characteristics in structurally similar protein pairs

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Use of NMR to detect water within nonpolar protein cavities

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Voronoi polyhedra as structure probes in large molecular systems

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Modeling side-chain conformation for homologous proteins using an energy-based rotamer search

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Pattern recognition and self-correcting distance geometry calculations applied to myohemerythrin.

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Novel method for the rapid evaluation of packing in protein structures

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Theoretical studies of protein folding and unfolding

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Prediction of quaternary structure of coiled coils. Application to mutants of the GCN4 leucine zipper

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Folding of a four-helix bundle: studies of acyl-coenzyme A binding protein

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Hydration of Proteins and Polypeptides

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Flexibility of the DNA-binding domains of trp repressor

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Analytical molecular surface calculation

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Identification of regions of potential flexibility in protein structures: folding units and correlations with intron positions

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Conformation of amino acid side-chains in proteins

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Domain closure in lactoferrin. Two hinges produce a see-saw motion between alternative close-packed interfaces

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

The hydration of globular proteins as derived from volume and compressibility measurements: cross correlating thermodynamic and structural data

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Structural mechanisms for domain movements in proteins

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Structural description of acid-denatured cytochrome c by hydrogen exchange and 2D NMR.

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

A Functional Role for Protein Cavities in Domain:Domain Motions

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Efficient rotamer elimination applied to protein side-chains and related spin glasses

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Protein-protein recognition analyzed by docking simulation.

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Principles of protein folding--a perspective from simple exact models.

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

How molten is the molten globule?

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Protein docking and complementarity

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Specific intermediates in the folding reactions of small proteins and the mechanism of protein folding

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Protein structure prediction by threading methods: evaluation of current techniques

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Internal packing and protein structural classes

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Folding proteins with a simple energy function and extensive conformational searching

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

The role of helix formation in the folding of a fully alpha-helical coiled coil

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

A simplified representation of protein conformations for rapid simulation of protein folding

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

On-pathway versus off-pathway folding intermediates

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Monte Carlo simulations of protein folding. I. Lattice model and interaction scheme.

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Submillisecond folding of monomeric lambda repressor

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Accurate modeling of protein conformation by automatic segment matching

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Prediction of homologous protein structures based on conformational searches and energetics.

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Stabilization of barstar by chemical modification of the buried cysteines

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

The crystal structure of a mutant protein with altered but improved hydrophobic core packing

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Computer modeling of protein folding: conformational and energetic analysis of reduced and detailed protein models

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

The building of protein structures from alpha-carbon coordinates

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

The radius of gyration of an apomyoglobin folding intermediate

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Role of hydrogen bonds in hydrophobicity: the free energy of cavity formation in water models with and without the hydrogen bonds

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Comparison of two highly refined structures of bovine pancreatic trypsin inhibitor

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

A new approach to the rapid determination of protein side chain conformations

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

An early intermediate of refolding alpha-lactalbumin forms within 20 ms

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Prediction of protein backbone conformation based on seven structure assignments. Influence of local interactions

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Predicting protein mutant energetics by self-consistent ensemble optimization.

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Dominant forces in protein folding

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Repacking protein cores with backbone freedom: structure prediction for coiled coils

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

PROBIT: A statistical approach to modeling proteins from partial coordinate data using substructure libraries

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Prediction of protein side-chain conformation by packing optimization.

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

The interpretation of protein structures: Estimation of static accessibility

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Optimal sequence selection in proteins of known structure by simulated evolution

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Fast folding of a prototypic polypeptide: the immunoglobulin binding domain of streptococcal protein G.

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Fast events in protein folding

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Structure of rice ferricytochrome c at 2·0 Å resolution

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

The dead-end elimination theorem and its use in protein side-chain positioning

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

A simplified amino acid potential for use in structure predictions of proteins.

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

3 Measurements of preferential solvent interactions by densimetric techniques

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Mechanism of acid-induced folding of proteins

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Determinants of protein side-chain packing

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Role of proline isomerization in folding of ribonuclease A at low temperatures

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Three-state analysis of sperm whale apomyoglobin folding

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Recognizing native folds by the arrangement of hydrophobic and polar residues

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Thermodynamics of unfolding of ribonuclease A under high pressure. A study by proton NMR

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Stabilization of Escherichia coli ribonuclease HI by cavity-filling mutations within a hydrophobic core

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Domain closure in mitochondrial aspartate aminotransferase

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Intramolecular cavities in globular proteins

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Buried waters and internal cavities in monomeric proteins

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Packing at the protein-water interface

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Mechanism of folding of ribonuclease A. Slow refolding is a sequential reaction via structural intermediates

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

The classification and origins of protein folding patterns

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Rotamers: to be or not to be? An analysis of amino acid side-chain conformations in globular proteins.

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Role of electrostatic repulsion in the acidic molten globule of cytochrome c

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Backbone-dependent rotamer library for proteins. Application to side-chain prediction

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Volumetric Characterizations of the Native, Molten Globule and Unfolded States of Cytochromecat Acidic pH

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Compactness of thermally and chemically denatured ribonuclease A as revealed by volume and compressibility

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Prediction of protein side-chain conformations from local three-dimensional homology relationships

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Lattice model simulations of polypeptide chain folding

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Rebuilding flavodoxin from C alpha coordinates: a test study

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Multiple copy sampling: rigid versus flexible protein.

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Conformational analysis of the backbone-dependent rotamer preferences of protein sidechains

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Volume occupation, environment, and accessibility in proteins. Environment and molecular area of RNase-S

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Cavities and packing at protein interfaces

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Energy functions that discriminate X-ray and near native folds from well-constructed decoys

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Domain closure in adenylate kinase. Joints on either side of two helices close like neighboring fingers

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Contact potential that recognizes the correct folding of globular proteins

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Further evidence on the equilibrium "pre-molten globule state": four-state guanidinium chloride-induced unfolding of carbonic anhydrase B at low temperature

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

A native-like intermediate on the ribonuclease A folding pathway. 2. Comparison of its properties to native ribonuclease A

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Polymer principles in protein structure and stability.

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Factors affecting the ability of energy functions to discriminate correct from incorrect folds

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

New algorithm to model protein-protein recognition based on surface complementarity. Applications to antibody-antigen docking

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Enhanced dead-end elimination in the search for the global minimum energy conformation of a collection of protein side chains

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Early folding intermediate of ribonuclease A.

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Ligand docking to proteins with discrete side-chain flexibility.

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Structural characterization of a partly folded apomyoglobin intermediate

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

The roles of partly folded intermediates in protein folding.

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Folding the main chain of small proteins with the genetic algorithm.

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

The molten globule state of alpha-lactalbumin.

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

The Energy Landscapes and Motions of Proteins

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

The barriers in protein folding

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

What is the natural boundary of a protein in solution?

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

What makes a protein a protein? Hydrophobic core designs that specify stability and structural properties

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Detection of internal cavities in globular proteins.

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

On the analytical calculation of van der Waals surfaces and volumes: Some numerical aspects

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Nature of the early folding intermediate of ribonuclease A.

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

A self consistent mean field approach to simultaneous gap closure and side-chain positioning in homology modelling

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Bipartite structure of the alpha-lactalbumin molten globule

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Peptide models of protein folding initiation sites. 1. Secondary structure formation by peptides corresponding to the G- and H-helices of myoglobin

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Mechanisms of domain closure in proteins

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Buried water in homologous serine proteases

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Computational studies of the interaction of myoglobin and xenon

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Is there a single pathway for the folding of a polypeptide chain?

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Three-dimensional alpha shapes

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Nucleation, rapid folding, and globular intrachain regions in proteins

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Adiabatic compressibility of globular proteins

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Side chain packing of the N- and C-terminal helices plays a critical role in the kinetics of cytochrome c folding

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

The interpretation of protein structures: Total volume, group volume distributions and packing density

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

'Molten-globule' state accumulates in carbonic anhydrase folding

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Structural characterization of the molten globule and native states of apomyoglobin by solution X-ray scattering

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Core-packing constraints, hydrophobicity and protein design

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Solvation energy in protein folding and binding

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Volume occupation, environment and accessibility in proteins. The problem of the protein surface

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV.BIOCHEM.66.1.549

Identifiers

DOI

10.1146/ANNUREV.BIOCHEM.66.1.549

1 reference

21 June 2017

1 reference