Modeling allosteric signal propagation using protein structure networks (Q30399957)

18 October 2017

Modeling allosteric signal propagation using protein structure networks (English)

1 reference

18 October 2017

Keunwan Park

1

1 reference

PMC publication ID

3044278

18 October 2017

Dongsup Kim

series ordinal

2

1 reference

18 October 2017

15 February 2011

1 reference

18 October 2017

1 reference

18 October 2017

12 Suppl 1

1 reference

18 October 2017

S23

1 reference

Creative Commons Attribution 2.0 Generic

18 October 2017

start time

15 February 2011

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

The origin of allosteric functional modulation: multiple pre-existing pathways

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Fast predictions of thermodynamics and kinetics of protein-protein recognition from structures: from molecular design to systems biology

20 June 2018

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Perturbation waves in proteins and protein networks: applications of percolation and game theories in signaling and drug design.

20 June 2018

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Modeling signal propagation mechanisms and ligand-based conformational dynamics of the Hsp90 molecular chaperone full-length dimer

20 June 2018

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A feature-based approach to modeling protein-protein interaction hot spots.

20 June 2018

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Direct observation of the dynamic process underlying allosteric signal transmission.

20 June 2018

1 reference

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Allostery: an illustrated definition for the 'second secret of life'.

20 June 2018

1 reference

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Allosteric regulation and catalysis emerge via a common route.

20 June 2018

1 reference

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Structural diversity of G protein-coupled receptors and significance for drug discovery

20 June 2018

1 reference

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Allosteric cooperativity in protein kinase A.

20 June 2018

1 reference

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N- and C-terminal flanking regions modulate light-induced signal transduction in the LOV2 domain of the blue light sensor phototropin 1 from Avena sativa

20 June 2018

1 reference

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Information flow in interaction networks.

20 June 2018

1 reference

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Crystal Structure of a Thermally Stable Rhodopsin Mutant

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3044278

New insight into long-range nonadditivity within protein double-mutant cycles

20 June 2018

1 reference

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Efficient identification of critical residues based only on protein structure by network analysis.

20 June 2018

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Screened nonbonded interactions in native proteins manipulate optimal paths for robust residue communication.

20 June 2018

1 reference

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Signal transduction pathway of TonB-dependent transporters

20 June 2018

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Dynamically driven protein allostery.

20 June 2018

1 reference

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Markov propagation of allosteric effects in biomolecular systems: application to GroEL-GroES.

20 June 2018

1 reference

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Residues crucial for maintaining short paths in network communication mediate signaling in proteins

20 June 2018

1 reference

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Conformational changes in protein loops and helices induced by post-translational phosphorylation

20 June 2018

1 reference

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Allosteric signaling of ATP hydrolysis in GroEL-GroES complexes

20 June 2018

1 reference

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Oligomeric protein structure networks: insights into protein-protein interactions

20 June 2018

1 reference

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Improved prediction of critical residues for protein function based on network and phylogenetic analyses

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3044278

Allosteric mechanisms of signal transduction

20 June 2018

1 reference

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Is allostery an intrinsic property of all dynamic proteins?

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3044278

Ligand-dependent dynamics and intramolecular signaling in a PDZ domain

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3044278

The role of dynamics in allosteric regulation

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3044278

Structure of Cdc42 in a complex with the GTPase-binding domain of the cell polarity protein, Par6

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3044278

Evolutionarily conserved networks of residues mediate allosteric communication in proteins

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3044278

Rhodopsin: insights from recent structural studies.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3044278

Uncovering molecular mechanisms involved in activation of G protein-coupled receptors

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3044278

Evolutionarily conserved pathways of energetic connectivity in protein families

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3044278

Structural features and light-dependent changes in the sequence 306-322 extending from helix VII to the palmitoylation sites in rhodopsin: a site-directed spin-labeling study

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3044278

Localized network centrality and essentiality in the yeast-protein interaction network

20 June 2018

1 reference

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Mechanisms of inter- and intramolecular communication in GPCRs and G proteins.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3044278

A Network of Conserved Interactions Regulates the Allosteric Signal in a Glutamine Amidotransferase†

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3044278

Intramolecular signaling pathways revealed by modeling anisotropic thermal diffusion

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3044278

Disruption of the LOV-Jalpha helix interaction activates phototropin kinase activity

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3044278

Propagation of Dynamic Changes in Barnase Upon Binding of Barstar: An NMR and Computational Study

26 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21342553

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Single-cysteine substitution mutants at amino acid positions 306-321 in rhodopsin, the sequence between the cytoplasmic end of helix VII and the palmitoylation sites: sulfhydryl reactivity and transducin activation reveal a tertiary structure

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21342553

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2105-12-S1-S23

1 reference

18 October 2017

journals/bmcbi/ParkK11

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

PMC publication ID

3044278

18 October 2017

PubMed publication ID

21342553

1 reference

PMC publication ID

3044278