A beta-mixture quantile normalization method for correcting probe design bias in Illumina Infinium 450 k DNA methylation data (Q30578296)

18 October 2017

A beta-mixture quantile normalization method for correcting probe design bias in Illumina Infinium 450 k DNA methylation data (English)

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18 October 2017

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6

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18 October 2017

2

Francesco Marabita

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18 October 2017

Thomas Bartlett

4

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Jesper Tegnér

series ordinal

5

Jesper Tegner

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18 October 2017

Andrew E Teschendorff

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1

Andrew E Teschendorff

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18 October 2017

Matthias Lechner

3

1 reference

18 October 2017

Stephan Beck

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7

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18 October 2017

language of work or name

English

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publication date

21 November 2012

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18 October 2017

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18 October 2017

29

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18 October 2017

2

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18 October 2017

189-196

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Creative Commons Attribution 3.0 Unported

18 October 2017

start time

2 October 2016

1 reference

April 2023 Public Data File from Crossref

copyright status

copyrighted

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describes a project that uses

minfi

minfi

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CZ Software Mentions: A large dataset of software mentions in the biomedical literature

limma

limma

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

SWAN: Subset-quantile within array normalization for illumina infinium HumanMethylation450 BeadChips

1 reference

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Complete pipeline for Infinium(®) Human Methylation 450K BeadChip data processing using subset quantile normalization for accurate DNA methylation estimation.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3546795

A comparison of feature selection and classification methods in DNA methylation studies using the Illumina Infinium platform.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3546795

Bump hunting to identify differentially methylated regions in epigenetic epidemiology studies.

14 July 2018

1 reference

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IDH1 mutation is sufficient to establish the glioma hypermethylator phenotype

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3546795

IMA: an R package for high-throughput analysis of Illumina's 450K Infinium methylation data

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3546795

Genome-wide DNA methylation profiling using Infinium® assay

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3546795

Epigenome-wide association studies for common human diseases

14 July 2018

1 reference

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Validation of a DNA methylation microarray for 450,000 CpG sites in the human genome

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3546795

Comparison of Beta-value and M-value methods for quantifying methylation levels by microarray analysis

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3546795

Epigenomics reveals a functional genome anatomy and a new approach to common disease

14 July 2018

1 reference

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Semi-supervised recursively partitioned mixture models for identifying cancer subtypes

14 July 2018

1 reference

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Redefining CpG islands using hidden Markov models

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3546795

Transcriptome-guided characterization of genomic rearrangements in a breast cancer cell line

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3546795

Model-based clustering of DNA methylation array data: a recursive-partitioning algorithm for high-dimensional data arising as a mixture of beta distributions

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3546795

The epigenomics of cancer

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3546795

DNA methylation profiling of human chromosomes 6, 20 and 22

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3546795

Epigenetic gene silencing in cancer – a mechanism for early oncogenic pathway addiction?

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3546795

The epigenetic progenitor origin of human cancer

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3546795

Comprehensive analysis of CpG islands in human chromosomes 21 and 22

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3546795

CpG islands in vertebrate genomes

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3546795

High density DNA methylation array with single CpG site resolution

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3546795

Epigenetics as a unifying principle in the aetiology of complex traits and diseases.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3546795

Applications of beta-mixture models in bioinformatics

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3546795

Evaluation of the Infinium Methylation 450K technology

26 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23175756

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/BIOINFORMATICS/BTS680

1 reference

journals/bioinformatics/TeschendorffMLBTGB13

18 October 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

18 October 2017

1 reference