Ecophysiology of uncultivated marine euryarchaea is linked to particulate organic matter. (Q30658673)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25615436%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

title

Ecophysiology of uncultivated marine euryarchaea is linked to particulate organic matter (English)

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28 February 2020

1 reference

2

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28 February 2020

Paul Carini

series ordinal

5

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28 February 2020

Alyson E Santoro

series ordinal

7

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28 February 2020

6

Alexandra Z Worden

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28 February 2020

1

William D Orsi

1 reference

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28 February 2020

4

Jarred E Swalwell

1 reference

28 February 2020

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3

Heather M Wilcox

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28 February 2020

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25615436%20AND%20SRC:MED&resulttype=core&format=json

publication date

23 January 2015

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28 February 2020

number of pages

17

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based on heuristic

inferred from page(s)

published in

The ISME Journal

1 reference

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28 February 2020

volume

9

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28 February 2020

issue

8

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28 February 2020

page(s)

1747-1763

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Creative Commons Attribution-NonCommercial-NoDerivs 3.0 Unported

28 February 2020

copyright license

start time

23 January 2015

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

Cyanobacterial distributions along a physico-chemical gradient in the Northeastern Pacific Ocean

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4511931

Marine ammonia-oxidizing archaeal isolates display obligate mixotrophy and wide ecotypic variation.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4511931

Genomes of two new ammonia-oxidizing archaea enriched from deep marine sediments

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4511931

Microbial control of the dark end of the biological pump

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4511931

Competition-dispersal tradeoff ecologically differentiates recently speciated marine bacterioplankton populations

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4511931

Reconciliation of the carbon budget in the ocean's twilight zone

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4511931

High frequency of phylogenetically diverse reductive dehalogenase-homologous genes in deep subseafloor sedimentary metagenomes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4511931

Differential contributions of archaeal ammonia oxidizer ecotypes to nitrification in coastal surface waters

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4511931

The epsomitic phototrophic microbial mat of Hot Lake, Washington: community structural responses to seasonal cycling

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4511931

Metagenomic analysis of size-fractionated picoplankton in a marine oxygen minimum zone

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4511931

Contrasting genomic properties of free-living and particle-attached microbial assemblages within a coastal ecosystem

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4511931

Structure of the rare archaeal biosphere and seasonal dynamics of active ecotypes in surface coastal waters.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4511931

Pattern and synchrony of gene expression among sympatric marine microbial populations.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4511931

The M5nr: a novel non-redundant database containing protein sequences and annotations from multiple sources and associated tools

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4511931

Untangling genomes from metagenomes: revealing an uncultured class of marine Euryarchaeota

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4511931

Phosphate transporters in marine phytoplankton and their viruses: cross-domain commonalities in viral-host gene exchanges

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4511931

FLASH: fast length adjustment of short reads to improve genome assemblies

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4511931

UCHIME improves sensitivity and speed of chimera detection

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4511931

Energy starved Candidatus Pelagibacter ubique substitutes light-mediated ATP production for endogenous carbon respiration

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4511931

Enrichment and characterization of ammonia-oxidizing archaea from the open ocean: phylogeny, physiology and stable isotope fractionation

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4511931

Search and clustering orders of magnitude faster than BLAST

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4511931

Metagenome of the Mediterranean deep chlorophyll maximum studied by direct and fosmid library 454 pyrosequencing

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4511931

QIIME allows analysis of high-throughput community sequencing data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4511931

SeaView version 4: A multiplatform graphical user interface for sequence alignment and phylogenetic tree building

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4511931

Hindsight in the relative abundance, metabolic potential and genome dynamics of uncultivated marine archaea from comparative metagenomic analyses of bathypelagic plankton of different oceanic regions

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4511931

Electron microscopy encounters with unusual thermophiles helps direct genomic analysis of Aciduliprofundum boonei

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4511931

Design and testing of 'genome-proxy' microarrays to profile marine microbial communities

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4511931

SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4511931

Quantitative distribution of presumptive archaeal and bacterial nitrifiers in Monterey Bay and the North Pacific Subtropical Gyre

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4511931

Archaeal nitrification in the ocean

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4511931

A ubiquitous thermoacidophilic archaeon from deep-sea hydrothermal vents.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4511931

Quantifying archaeal community autotrophy in the mesopelagic ocean using natural radiocarbon.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4511931

Proteorhodopsin lateral gene transfer between marine planktonic Bacteria and Archaea

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4511931

Community genomics among stratified microbial assemblages in the ocean's interior

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4511931

Isolation of an autotrophic ammonia-oxidizing marine archaeon

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4511931

Analysis of a genome fragment of a deep-sea uncultivated Group II euryarchaeote containing 16S rDNA, a spectinomycin-like operon and several energy metabolism genes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4511931

Combining catalyzed reporter deposition-fluorescence in situ hybridization and microautoradiography to detect substrate utilization by bacteria and Archaea in the deep ocean.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4511931

ARB: a software environment for sequence data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4511931

MRBAYES: Bayesian inference of phylogenetic trees

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4511931

Construction and analysis of bacterial artificial chromosome libraries from a marine microbial assemblage

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4511931

Quantitative analysis of small-subunit rRNA genes in mixed microbial populations via 5'-nuclease assays

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4511931

Bacterial rhodopsin: evidence for a new type of phototrophy in the sea

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4511931

A few cosmopolitan phylotypes dominate planktonic archaeal assemblages in widely different oceanic provinces

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4511931

Vertical distribution and phylogenetic characterization of marine planktonic Archaea in the Santa Barbara Channel

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4511931

Kinetics of nutrient-limited transport and microbial growth

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4511931

Genetic diversity in Sargasso Sea bacterioplankton

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4511931

Archaea in coastal marine environments

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4511931

Novel major archaebacterial group from marine plankton

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4511931

VERTIGO (VERtical Transport In the Global Ocean): A study of particle sources and flux attenuation in the North Pacific

20 June 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2014.260

Archaeaplankton in the Columbia River, its estuary and the adjacent coastal ocean, USA

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2014.260

Inter-annual recurrence of archaeal assemblages in the coastal NW Mediterranean Sea (Blanes Bay Microbial Observatory)

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2014.260

Heterogeneous archaeal communities in the particle-rich environment of an arctic shelf ecosystem

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2014.260

Contribution of Archaea to total prokaryotic production in the deep Atlantic Ocean.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2014.260

Resource partitioning and sympatric differentiation among closely related bacterioplankton.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2014.260

Downward flux of particulate organic matter in the ocean: a particle decomposition paradox

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2014.260

Pigments, size, and distributions of Synechococcus in the North Atlantic and Pacific Oceans

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2014.260

Near real-time, autonomous detection of marine bacterioplankton on a coastal mooring in Monterey Bay, California, using rRNA-targeted DNA probes

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2014.260

Isotopic signature of N(2)O produced by marine ammonia-oxidizing archaea

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2014.260

Activity, abundance and diversity of nitrifying archaea and bacteria in the central California Current

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2014.260

Population genomics of early events in the ecological differentiation of bacteria.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2014.260

The California Current system off Monterey, California: physical and biological coupling

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2014.260

Bacterial vs. zooplankton control of sinking particle flux in the ocean's twilight zone

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2014.260

Major role of bacteria in biogeochemical fluxes in the ocean's interior

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2014.260

Surface patterns in temperature, flow, phytoplankton biomass, and species composition in the coastal transition zone off Northern California

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2014.260

inferred from DOI database lookup

7 January 2021

based on heuristic

Identifiers

DOI

10.1038/ISMEJ.2014.260

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25615436%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

28 February 2020

0 references

1 reference

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28 February 2020

PubMed publication ID

25615436

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25615436%20AND%20SRC:MED&resulttype=core&format=json