Folding and stability of the three-stranded beta-sheet peptide Betanova: insights from molecular dynamics simulations (Q30672007)

26 June 2017

title

Folding and stability of the three-stranded beta-sheet peptide Betanova: insights from molecular dynamics simulations (English)

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molecular dynamics simulation

26 June 2017

main subject

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author name string

Giorgio Colombo

series ordinal

1

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26 June 2017

Danilo Roccatano

series ordinal

2

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26 June 2017

Alan E Mark

series ordinal

3

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26 June 2017

language of work or name

English

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publication date

1 March 2002

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26 June 2017

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26 June 2017

volume

46

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26 June 2017

issue

4

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26 June 2017

page(s)

380-392

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Characterizing transition states in protein folding: an essential step in the puzzle

26 June 2017

cites work

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21 January 2018

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Fast events in protein folding initiated by nanosecond laser photolysis

21 January 2018

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Statistical potentials extracted from protein structures: how accurate are they?

21 January 2018

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A critical evaluation of methods for prediction of protein secondary structures

21 January 2018

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Protein folding simulations with genetic algorithms and a detailed molecular description

21 January 2018

1 reference

"New view" of protein folding reconciled with the old through multiple unfolding simulations.

21 January 2018

1 reference

Theoretical studies of protein folding and unfolding

21 January 2018

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Synergy between simulation and experiment in describing the energy landscape of protein folding

21 January 2018

1 reference

Folding thermodynamics of a model three-helix-bundle protein.

21 January 2018

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Pathways to a protein folding intermediate observed in a 1-microsecond simulation in aqueous solution

21 January 2018

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Reversible peptide folding in solution by molecular dynamics simulation

21 January 2018

1 reference

Elucidating the folding problem of alpha-helices: local motifs, long-range electrostatics, ionic-strength dependence and prediction of NMR parameters.

21 January 2018

1 reference

Analysis of the effect of local interactions on protein stability.

21 January 2018

1 reference

Protein Folding: A Perspective from Theory and Experiment.

21 January 2018

1 reference

Amyloid fibril formation and protein misassembly: a structural quest for insights into amyloid and prion diseases

21 January 2018

1 reference

Instability, unfolding and aggregation of human lysozyme variants underlying amyloid fibrillogenesis

21 January 2018

1 reference

A short linear peptide derived from the N-terminal sequence of ubiquitin folds into a water-stable non-native β-hairpin

21 January 2018

1 reference

A molecular dynamics study of the 41-56 beta-hairpin from B1 domain of protein G

21 January 2018

1 reference

beta-hairpin stability and folding: molecular dynamics studies of the first beta-hairpin of tendamistat

21 January 2018

1 reference

Molecular dynamics simulations of a beta-hairpin fragment of protein G: balance between side-chain and backbone forces

21 January 2018

1 reference

Folding simulations of a three-stranded antiparallel beta -sheet peptide

21 January 2018

1 reference

Stability of the beta-sheet of the WW domain: A molecular dynamics simulation study

21 January 2018

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Monte Carlo simulations of beta-hairpin folding at constant temperature

21 January 2018

1 reference

Design of a 20-amino acid, three-stranded beta-sheet protein

21 January 2018

1 reference

Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

21 January 2018

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Obligatory steps in protein folding and the conformational diversity of the transition state

21 January 2018

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Identifying the protein folding nucleus using molecular dynamics.

21 January 2018

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Motional dynamics of residues in a beta-hairpin peptide measured by 13C-NMR relaxation

21 January 2018

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Folding dynamics and mechanism of beta-hairpin formation

21 January 2018

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The missing term in effective pair potentials

21 January 2018

1 reference

MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures

21 January 2018

1 reference

MOLMOL: a program for display and analysis of macromolecular structures

21 January 2018

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Peptide conformation and protein folding

21 January 2018

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Molecular dynamics with coupling to an external bath

21 January 2018

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Turn Residue Sequence Determines β-Hairpin Conformation in Designed Peptides

21 January 2018

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Theoretical studies of protein-folding thermodynamics and kinetics

21 January 2018

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First-principles calculation of the folding free energy of a three-helix bundle protein

21 January 2018

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Peptide Folding: When Simulation Meets Experiment

21 January 2018

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Folding-unfolding thermodynamics of a beta-heptapeptide from equilibrium simulations

21 January 2018

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Guidelines for protein design: the energetics of beta sheet side chain interactions

21 January 2018

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NMR solution structure of the isolated N-terminal fragment of protein-G B1 domain. Evidence of trifluoroethanol induced native-like beta-hairpin formation

21 January 2018

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De novo design and structural analysis of a model beta-hairpin peptide system

21 January 2018

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Nanosecond time scale folding dynamics of a pentapeptide in water

21 January 2018

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Backbone flexibility and stability of reverse turn conformation in a model system

21 January 2018

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Dynamics of a type VI reverse turn in a linear peptide in aqueous solution

21 January 2018

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Settle: An analytical version of the SHAKE and RATTLE algorithm for rigid water models

21 January 2018

1 reference

21 January 2018

Identifiers

DOI

10.1002/PROT.1175

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release_gjw4qf6bnzd2bnqww3s2td5ki4

26 June 2017

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/gjw4qf6bnzd2bnqww3s2td5ki4

mapped directly with Wikidata item

24 November 2022

based on heuristic

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