VNTRseek-a computational tool to detect tandem repeat variants in high-throughput sequencing data. (Q30838289)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25056320%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

title

VNTRseek-a computational tool to detect tandem repeat variants in high-throughput sequencing data (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25056320%20AND%20SRC:MED&resulttype=core&format=json

high-throughput sequencing

10 March 2020

main subject

1 reference

1 reference

2

1 reference

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10 March 2020

author name string

Yevgeniy Gelfand

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25056320%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

Joshua Loving

series ordinal

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25056320%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

Gary Benson

series ordinal

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25056320%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

language of work or name

English

0 references

publication date

23 July 2014

1 reference

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10 March 2020

published in

Nucleic Acids Research

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10 March 2020

volume

42

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10 March 2020

page(s)

8884-8894

1 reference

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10 March 2020

issue

14

1 reference

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Creative Commons Attribution 4.0 International

10 March 2020

copyright license

start time

4 October 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

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BreakDancer: an algorithm for high-resolution mapping of genomic structural variation

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Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads

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Accurate, Large-Scale Genotyping of 5HTTLPR and Flanking Single Nucleotide Polymorphisms in an Association Study of Depression, Anxiety, and Personality Measures

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Fast and accurate short read alignment with Burrows-Wheeler transform

14 July 2018

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Combinatorial algorithms for structural variation detection in high-throughput sequenced genomes

14 July 2018

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CNV-seq, a new method to detect copy number variation using high-throughput sequencing

14 July 2018

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14 July 2018

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14 July 2018

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14 July 2018

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14 July 2018

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14 July 2018

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Role of serotonin transporter polymorphisms in the behavioural and psychological symptoms in probable Alzheimer disease patients

14 July 2018

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A Genetic Change Associated with the R Locus in Maize Which Is Directed and Potentially Reversible

14 July 2018

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14 July 2018

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14 July 2018

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14 July 2018

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Meta-analysis reveals association between serotonin transporter gene STin2 VNTR polymorphism and schizophrenia

14 July 2018

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Role of transposable elements in heterochromatin and epigenetic control

14 July 2018

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Predicting human minisatellite polymorphism

14 July 2018

1 reference

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Differential chromatin structure within a tandem array 100 kb upstream of the maize b1 locus is associated with paramutation

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132751

PatternHunter: faster and more sensitive homology search

14 July 2018

1 reference

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SSAHA: a fast search method for large DNA databases

14 July 2018

1 reference

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Estimating the time to the most recent common ancestor for the Y chromosome or mitochondrial DNA for a pair of individuals

14 July 2018

1 reference

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dbSNP: the NCBI database of genetic variation

14 July 2018

1 reference

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The structure and paramutagenicity of the R-marbled haplotype of Zea mays

14 July 2018

1 reference

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Tandem repeats finder: a program to analyze DNA sequences

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132751

Paramutation of the r1 locus of maize is associated with increased cytosine methylation.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132751

Association of anxiety-related traits with a polymorphism in the serotonin transporter gene regulatory region

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132751

Friedreich's ataxia: autosomal recessive disease caused by an intronic GAA triplet repeat expansion

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132751

A novel gene containing a trinucleotide repeat that is expanded and unstable on Huntington's disease chromosomes.

14 July 2018

1 reference

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Basic local alignment search tool

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132751

Identification of a gene (FMR-1) containing a CGG repeat coincident with a breakpoint cluster region exhibiting length variation in fragile X syndrome

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132751

An unstable triplet repeat in a gene related to myotonic muscular dystrophy

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132751

Meta-analysis of the association between two polymorphisms in the serotonin transporter gene and affective disorders

14 July 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKU642

Monoamine metabolites level in CSF is related to the 5-HTT gene polymorphism in treatment-resistant depression.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKU642

Association between the Stin2 VNTR polymorphism of the serotonin transporter gene and treatment outcome in alcohol-dependent patients

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKU642

The late flowering phenotype of fwa mutants is caused by gain-of-function epigenetic alleles of a homeodomain gene.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKU642

MoDIL: detecting small indels from clone-end sequencing with mixtures of distributions

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKU642

All hits all the time: parameter-free calculation of spaced seed sensitivity.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKU642

Algorithms for approximate string matching

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKU642

A fast bit-vector algorithm for approximate string matching based on dynamic programming

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKU642

Mersenne twister: a 623-dimensionally equidistributed uniform pseudo-random number generator

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKU642

Serotonin transporter gene polymorphism and BPSD in mild Alzheimer's disease

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132751

Evaluating distance functions for clustering tandem repeats

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132751

A new distance measure for comparing sequence profiles based on path lengths along an entropy surface

25 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25056320

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKU642

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25056320%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25056320%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25056320%20AND%20SRC:MED&resulttype=core&format=json