Influence of RNA extraction methods and library selection schemes on RNA-seq data (Q30842108)

9 October 2017

Influence of RNA extraction methods and library selection schemes on RNA-seq data (English)

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9 October 2017

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Marie-Laure Yaspo

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9 October 2017

8

Hans Lehrach

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9 October 2017

Marc Sultan

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9 October 2017

Vyacheslav Amstislavskiy

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9 October 2017

Thomas Risch

3

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9 October 2017

Moritz Schuette

4

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9 October 2017

Simon Dökel

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9 October 2017

Meryem Ralser

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9 October 2017

Daniela Balzereit

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9 October 2017

language of work or name

English

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publication date

11 August 2014

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9 October 2017

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9 October 2017

15

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9 October 2017

675

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https://scigraph.springernature.com/pub.10.1186/1471-2164-15-675

9 October 2017

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cites work

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21 June 2018

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Comparison of total and cytoplasmic mRNA reveals global regulation by nuclear retention and miRNAs

21 June 2018

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Intronic RNAs constitute the major fraction of the non-coding RNA in mammalian cells

21 June 2018

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Landscape of transcription in human cells

21 June 2018

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A simple strand-specific RNA-Seq library preparation protocol combining the Illumina TruSeq RNA and the dUTP methods

21 June 2018

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21 June 2018

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Total RNA sequencing reveals nascent transcription and widespread co-transcriptional splicing in the human brain

21 June 2018

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Differential expression in RNA-seq: a matter of depth

21 June 2018

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Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses

21 June 2018

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The reality of pervasive transcription

21 June 2018

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Whole-transcriptome RNAseq analysis from minute amount of total RNA.

21 June 2018

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Protocol dependence of sequencing-based gene expression measurements

21 June 2018

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Genomewide characterization of non-polyadenylated RNAs

21 June 2018

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The majority of total nuclear-encoded non-ribosomal RNA in a human cell is 'dark matter' un-annotated RNA

21 June 2018

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Deep sequencing of the small RNA transcriptome of normal and malignant human B cells identifies hundreds of novel microRNAs

21 June 2018

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Identification of novel exons and transcribed regions by chimpanzee transcriptome sequencing

21 June 2018

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Most "dark matter" transcripts are associated with known genes

21 June 2018

1 reference

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Prediction of alternative isoforms from exon expression levels in RNA-Seq experiments

21 June 2018

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BEDTools: a flexible suite of utilities for comparing genomic features

21 June 2018

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Microarray analysis of cytoplasmic versus whole cell RNA reveals a considerable number of missed and false positive mRNAs

21 June 2018

1 reference

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CDK9 directs H2B monoubiquitination and controls replication-dependent histone mRNA 3'-end processing

21 June 2018

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Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression

21 June 2018

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Transcriptome sequencing of the Microarray Quality Control (MAQC) RNA reference samples using next generation sequencing

21 June 2018

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Fast and accurate short read alignment with Burrows-Wheeler transform

21 June 2018

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Evolution and functions of long noncoding RNAs

21 June 2018

1 reference

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Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals

21 June 2018

1 reference

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Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing

21 June 2018

1 reference

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Poly A- transcripts expressed in HeLa cells

21 June 2018

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Xist RNA is confined to the nuclear territory of the silenced X chromosome throughout the cell cycle

21 June 2018

1 reference

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A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome

21 June 2018

1 reference

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Mapping and quantifying mammalian transcriptomes by RNA-Seq

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4148917

XIST RNA exhibits nuclear retention and exhibits reduced association with the export factor TAP/NXF1.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4148917

Stability regulation of mRNA and the control of gene expression

21 June 2018

1 reference

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Antisense transcription in the mammalian transcriptome

21 June 2018

1 reference

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Polyadenylation and degradation of human mitochondrial RNA: the prokaryotic past leaves its mark

21 June 2018

1 reference

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Transcriptional maps of 10 human chromosomes at 5-nucleotide resolution

21 June 2018

1 reference

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The balance sheet for transcription: an analysis of nuclear RNA metabolism in mammalian cells

21 June 2018

1 reference

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Polyadenylation and U7 snRNP-mediated cleavage: alternative modes of RNA 3' processing in two avian histone H1 genes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4148917

Structure and transcription of a human gene for H1 RNA, the RNA component of human RNase P.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4148917

A gene from the region of the human X inactivation centre is expressed exclusively from the inactive X chromosome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4148917

A comparison between ribo-minus RNA-sequencing and polyA-selected RNA-sequencing

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4148917

NELF interacts with CBC and participates in 3' end processing of replication-dependent histone mRNAs.

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4148917

Pseudogenes for human small nuclear RNA U3 appear to arise by integration of self-primed reverse transcripts of the RNA into new chromosomal sites.

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4148917

Upstream sequences modulate the internal promoter of the human 7SL RNA gene

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4148917

Human Mitochondrial mRNAs Are Stabilized with Polyadenylation Regulated by Mitochondria-specific Poly(A) Polymerase and Polynucleotide Phosphorylase

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4148917

Construction of small RNA cDNA libraries for deep sequencing

25 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25113896

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2164-15-675

1 reference

Dimensions Publication ID

9 October 2017

1 reference

9 September 2019

https://scigraph.springernature.com/pub.10.1186/1471-2164-15-675

1 reference

9 October 2017

1 reference