Multiplexed peptide analysis using data-independent acquisition and Skyline (Q30956067)

20 August 2017

Multiplexed peptide analysis using data-independent acquisition and Skyline (English)

1 reference

20 August 2017

5

Michael J MacCoss

1 reference

20 August 2017

Jarrett D Egertson

1

1 reference

20 August 2017

Brendan MacLean

series ordinal

2

1 reference

20 August 2017

Richard Johnson

series ordinal

3

1 reference

20 August 2017

Yue Xuan

series ordinal

4

1 reference

20 August 2017

21 May 2015

1 reference

20 August 2017

1 reference

20 August 2017

10

1 reference

20 August 2017

6

1 reference

20 August 2017

887-903

1 reference

Tools for monitoring system suitability in LC MS/MS centric proteomic experiments

20 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5127711

Comparison of data acquisition strategies on quadrupole ion trap instrumentation for shotgun proteomics

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5127711

MixGF: spectral probabilities for mixture spectra from more than one peptide

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5127711

Implementation of statistical process control for proteomic experiments via LC MS/MS

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5127711

An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5127711

Recent advances in mass spectrometry: data independent analysis and hyper reaction monitoring

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5127711

Data-controlled automation of liquid chromatography/tandem mass spectrometry analysis of peptide mixtures

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5127711

Factorial experimental designs elucidate significant variables affecting data acquisition on a quadrupole Orbitrap mass spectrometer

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5127711

Multiplexed MS/MS for improved data-independent acquisition

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5127711

The Mtb proteome library: A resource of assays to quantify the complete proteome of mycobacterium tuberculosis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5127711

Statistical protein quantification and significance analysis in label-free LC-MS experiments with complex designs

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5127711

Mass spectrometry-based proteomics and network biology

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5127711

Accurate peptide fragment mass analysis: multiplexed peptide identification and quantification

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5127711

Targeted data extraction of the MS/MS spectra generated by data-independent acquisition: a new concept for consistent and accurate proteome analysis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5127711

Rapid empirical discovery of optimal peptides for targeted proteomics

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5127711

Fourier transform mass spectrometry

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5127711

Effect of collision energy optimization on the measurement of peptides by selected reaction monitoring (SRM) mass spectrometry

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5127711

Skyline: an open source document editor for creating and analyzing targeted proteomics experiments

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5127711

Deconvolution of mixture spectra from ion-trap data-independent-acquisition tandem mass spectrometry

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5127711

Proteomics by mass spectrometry: approaches, advances, and applications

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5127711

The detection, correlation, and comparison of peptide precursor and product ions from data independent LC-MS with data dependant LC-MS/MS.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5127711

Selected reaction monitoring for quantitative proteomics: a tutorial

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5127711

Orbitrap mass spectrometry: instrumentation, ion motion and applications

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5127711

Quantitative mass spectrometry in proteomics: a critical review

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5127711

Analysis of the Saccharomyces cerevisiae proteome with PeptideAtlas

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5127711

Chemistry. Mass spectrometry: bottom-up or top-down?

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5127711

UPLC/MS(E); a new approach for generating molecular fragment information for biomarker structure elucidation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5127711

Tandem mass spectrometry in quadrupole ion trap and ion cyclotron resonance mass spectrometers

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5127711

The utility of accurate mass and LC elution time information in the analysis of complex proteomes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5127711

Automated approach for quantitative analysis of complex peptide mixtures from tandem mass spectra

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5127711

Nanoflow LC/ion mobility/CID/TOF for proteomics: analysis of a human urinary proteome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5127711

Shotgun collision-induced dissociation of peptides using a time of flight mass analyzer

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5127711

Mass spectrometry-based proteomics

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5127711

The human plasma proteome: history, character, and diagnostic prospects

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5127711

Role of accurate mass measurement (+/- 10 ppm) in protein identification strategies employing MS or MS/MS and database searching.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5127711

Fourier transform ion cyclotron resonance mass spectrometry: a primer

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5127711

The quadrupole ion trap mass spectrometer--a small solution to a big challenge.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5127711

Advances in multiplexed MRM-based protein biomarker quantitation toward clinical utility.

21 June 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2015.055

OpenSWATH enables automated, targeted analysis of data-independent acquisition MS data

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2015.055

Selectivity of LC-MS/MS analysis: implication for proteomics experiments.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2015.055

Semi-supervised learning for peptide identification from shotgun proteomics datasets.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2015.055

Selected ion fragmentation with a tandem quadrupole mass spectrometer

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2015.055

Optimized Orbitrap HCD for quantitative analysis of phosphopeptides.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2015.055

Computational prediction of proteotypic peptides for quantitative proteomics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2015.055

High sensitivity detection of plasma proteins by multiple reaction monitoring of N-glycosites

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2015.055

Triple quadrupole mass spectrometry for direct mixture analysis and structure elucidation

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2015.055

31 March 2020

Tandem mass spectrometry

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2015.055

31 March 2020

Identifiers

DOI

10.1038/NPROT.2015.055

1 reference

Dimensions Publication ID

20 August 2017

0 references

1 reference

20 August 2017

PubMed publication ID

25996789

1 reference