Tools for monitoring system suitability in LC MS/MS centric proteomic experiments (Q38261241)

1 September 2017

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title

Tools for monitoring system suitability in LC MS/MS centric proteomic experiments (English)

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1 September 2017

Michael S Bereman

1

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1 September 2017

publication date

23 December 2014

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1 September 2017

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1 September 2017

volume

15

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1 September 2017

issue

5-6

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1 September 2017

page(s)

891-902

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The one hour yeast proteome

1 September 2017

cites work

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System-wide perturbation analysis with nearly complete coverage of the yeast proteome by single-shot ultra HPLC runs on a bench top Orbitrap

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Deep and highly sensitive proteome coverage by LC-MS/MS without prefractionation.

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The application of targeted mass spectrometry-based strategies to the detection and localization of post-translational modifications

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A method to determine the kinetics of multiple proteins in human infants with respiratory distress syndrome.

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Application of mass spectrometry to study proteomics and interactomics in cystic fibrosis

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The functional interactome landscape of the human histone deacetylase family

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Primate transcript and protein expression levels evolve under compensatory selection pressures

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Comparative functional analysis of the Caenorhabditis elegans and Drosophila melanogaster proteomes

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Accurate and sensitive peptide identification with Mascot Percolator

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Semi-supervised learning for peptide identification from shotgun proteomics datasets.

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Sources of technical variability in quantitative LC-MS proteomics: human brain tissue sample analysis

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Design and analysis issues in quantitative proteomics studies

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Statistical design for biospecimen cohort size in proteomics-based biomarker discovery and verification studies

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The role of statistical power analysis in quantitative proteomics

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Implementation of statistical process control for proteomic experiments via LC MS/MS

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Interlaboratory study characterizing a yeast performance standard for benchmarking LC-MS platform performance.

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Performance metrics for liquid chromatography-tandem mass spectrometry systems in proteomics analyses

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PRIDE: the proteomics identifications database

21 January 2018

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PRIDE: new developments and new datasets

21 January 2018

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The PRoteomics IDEntifications (PRIDE) database and associated tools: status in 2013

21 January 2018

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Recommendations for mass spectrometry data quality metrics for open access data (corollary to the Amsterdam Principles)

21 January 2018

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SIMPATIQCO: a server-based software suite which facilitates monitoring the time course of LC-MS performance metrics on Orbitrap instruments

21 January 2018

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Open mass spectrometry search algorithm

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QuaMeter: multivendor performance metrics for LC-MS/MS proteomics instrumentation

21 January 2018

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mzML--a community standard for mass spectrometry data

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ProteoWizard: open source software for rapid proteomics tools development

21 January 2018

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The mzIdentML data standard for mass spectrometry-based proteomics results

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201400373

QC metrics from CPTAC raw LC-MS/MS data interpreted through multivariate statistics

21 January 2018

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Detecting outliers: Do not use standard deviation around the mean, use absolute deviation around the median

21 January 2018

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SprayQc: a real-time LC-MS/MS quality monitoring system to maximize uptime using off the shelf components

21 January 2018

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Improved quality control processing of peptide-centric LC-MS proteomics data

21 January 2018

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A framework for installable external tools in Skyline

21 January 2018

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Skyline: an open source document editor for creating and analyzing targeted proteomics experiments

21 January 2018

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An introduction to statistical process control in research proteomics

21 January 2018

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Label-free quantitation of protein modifications by pseudo selected reaction monitoring with internal reference peptides

21 January 2018

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Method and platform standardization in MRM-based quantitative plasma proteomics

21 January 2018

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Design, implementation and multisite evaluation of a system suitability protocol for the quantitative assessment of instrument performance in liquid chromatography-multiple reaction monitoring-MS (LC-MRM-MS)

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201400373

Repeatability and reproducibility in proteomic identifications by liquid chromatography-tandem mass spectrometry

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201400373

What is principal component analysis?

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201400373

Application of clinical assay quality control (QC) to multivariate proteomics data: a workflow exemplified by 2-DE QC.

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201400373

Quality Control in Proteomics

21 January 2018

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Quality assessment for clinical proteomics

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201400373

Quality by design for biopharmaceuticals

21 January 2018

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Cutting edge proteomics: benchmarking of six commercial trypsins.

21 January 2018

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Understanding the role of proteolytic digestion on discovery and targeted proteomic measurements using liquid chromatography tandem mass spectrometry and design of experiments.

21 January 2018

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Comparative analysis to guide quality improvements in proteomics.

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201400373

A survey of computational methods and error rate estimation procedures for peptide and protein identification in shotgun proteomics

21 January 2018

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A HUPO test sample study reveals common problems in mass spectrometry-based proteomics

21 January 2018

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Automated approach for quantitative analysis of complex peptide mixtures from tandem mass spectra

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201400373

Multiplexed MS/MS for improved data-independent acquisition

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201400373

Targeted data extraction of the MS/MS spectra generated by data-independent acquisition: a new concept for consistent and accurate proteome analysis

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201400373

OpenSWATH enables automated, targeted analysis of data-independent acquisition MS data

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201400373

Post analysis data acquisition for the iterative MS/MS sampling of proteomics mixtures

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201400373

Interlaboratory studies and initiatives developing standards for proteomics

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201400373

qcML: an exchange format for quality control metrics from mass spectrometry experiments

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201400373

The minimum information about a proteomics experiment (MIAPE)

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201400373

Quality control in LC-MS/MS

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201400373

21 January 2018

Identifiers

DOI

10.1002/PMIC.201400373

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1 September 2017

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