Detecting actively translated open reading frames in ribosome profiling data (Q31031646)

28 June 2017

Detecting actively translated open reading frames in ribosome profiling data (English)

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28 June 2017

2

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28 June 2017

7

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28 June 2017

Lorenzo Calviello

1

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Emanuel Wyler

object named as

Emanuel Wyler

3

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Benedikt Obermayer

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Benedikt Obermayer

8

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Uwe Ohler

9

object named as

Uwe Ohler

1 reference

28 June 2017

Henrik Zauber

4

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28 June 2017

Antje Hirsekorn

5

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28 June 2017

Matthias Selbach

6

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28 June 2017

14 December 2015

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28 June 2017

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28 June 2017

13

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28 June 2017

2

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28 June 2017

165-170

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Quantitative profiling of initiating ribosomes in vivo

28 June 2017

1 reference

12 December 2020

Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling

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12 December 2020

Causal signals between codon bias, mRNA structure, and the efficiency of translation and elongation

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12 December 2020

Assessing gene-level translational control from ribosome profiling

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12 December 2020

Observation of dually decoded regions of the human genome using ribosome profiling data

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12 December 2020

CPAT: Coding-Potential Assessment Tool using an alignment-free logistic regression model

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12 December 2020

PROTEOFORMER: deep proteome coverage through ribosome profiling and MS integration

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12 December 2020

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

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12 December 2020

Ribosome profiling provides evidence that large noncoding RNAs do not encode proteins

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12 December 2020

Translational regulation shapes the molecular landscape of complex disease phenotypes.

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12 December 2020

Long noncoding RNAs are rarely translated in two human cell lines

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12 December 2020

Genome-wide search for novel human uORFs and N-terminal protein extensions using ribosomal footprinting

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12 December 2020

STAR: ultrafast universal RNA-seq aligner

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12 December 2020

Translation of 5' leaders is pervasive in genes resistant to eIF2 repression

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12 December 2020

Ribosome profiling reveals resemblance between long non-coding RNAs and 5' leaders of coding RNAs

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12 December 2020

Polypeptide Chain Initiation: Nucleotide Sequences of the Three Ribosomal Binding Sites in Bacteriophage R17 RNA

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12 December 2020

Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes

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12 December 2020

The ribosome profiling strategy for monitoring translation in vivo by deep sequencing of ribosome-protected mRNA fragments

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12 December 2020

GENCODE: the reference human genome annotation for The ENCODE Project

1 reference

12 December 2020

Ribosome profiling reveals pervasive translation outside of annotated protein-coding genes

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12 December 2020

GWIPS-viz: development of a ribo-seq genome browser

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12 December 2020

BEDTools: a flexible suite of utilities for comparing genomic features

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12 December 2020

Extensive identification and analysis of conserved small ORFs in animals

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12 December 2020

IPG strip-based peptide fractionation for shotgun proteomics.

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12 December 2020

Translation inhibitors cause abnormalities in ribosome profiling experiments

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12 December 2020

A review of multitaper spectral analysis

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12 December 2020

Extensive translation of small Open Reading Frames revealed by Poly-Ribo-Seq

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12 December 2020

Detecting translational regulation by change point analysis of ribosome profiling data sets

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12 December 2020

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

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12 December 2020

A fast Peptide Match service for UniProt Knowledgebase

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12 December 2020

uORFdb--a comprehensive literature database on eukaryotic uORF biology.

1 reference

12 December 2020

Identification of small ORFs in vertebrates using ribosome footprinting and evolutionary conservation.

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12 December 2020

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

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12 December 2020

RiboTools: a Galaxy toolbox for qualitative ribosome profiling analysis

1 reference

12 December 2020

PhyloCSF: a comparative genomics method to distinguish protein coding and non-coding regions

1 reference

12 December 2020

Accounting for biases in riboprofiling data indicates a major role for proline in stalling translation

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12 December 2020

IVT-seq reveals extreme bias in RNA sequencing

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12 December 2020

Distinct stages of the translation elongation cycle revealed by sequencing ribosome-protected mRNA fragments

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12 December 2020

Gene expression regulation by upstream open reading frames and human disease

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12 December 2020

Toddler: an embryonic signal that promotes cell movement via Apelin receptors

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12 December 2020

The translational landscape of fission-yeast meiosis and sporulation

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12 December 2020

Differential protein occupancy profiling of the mRNA transcriptome

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12 December 2020

Spectrum estimation and harmonic analysis

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Crossref

https://api.crossref.org/works/10.1038%2FNMETH.3688

7 January 2021

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Propagation of solar oscillations through the interplanetary medium

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Crossref

https://api.crossref.org/works/10.1038%2FNMETH.3688

7 January 2021

inferred from DOI database lookup

Identifiers

DOI

10.1038/NMETH.3688

1 reference

Dimensions Publication ID

28 June 2017

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1 reference