Extensive translation of small Open Reading Frames revealed by Poly-Ribo-Seq (Q35176538)

6 August 2017

Extensive translation of small Open Reading Frames revealed by Poly-Ribo-Seq (English)

1 reference

6 August 2017

Julie L Aspden

1

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author name string

Ying Chen Eyre-Walker

2

1 reference

6 August 2017

Rose J Phillips

3

1 reference

6 August 2017

Unum Amin

4

1 reference

6 August 2017

Muhammad Ali S Mumtaz

5

1 reference

6 August 2017

Michele Brocard

6

1 reference

6 August 2017

Juan-Pablo Couso

7

1 reference

6 August 2017

language of work or name

English

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publication date

21 August 2014

1 reference

full work available at URL

6 August 2017

http://eprints.whiterose.ac.uk/89859/

content deliverer

White Rose Research Online

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published in

eLife

1 reference

6 August 2017

3

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6 August 2017

e03528

1 reference

describes a project that uses

6 August 2017

ImageJ

1 reference

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC4359375/fullTextXML

based on heuristic

inferred from PubMed Central ID database lookup

cites work

Translation of small open reading frames within unannotated RNA transcripts in Saccharomyces cerevisiae

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The translational landscape of fission-yeast meiosis and sporulation

28 July 2018

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Identification of small ORFs in vertebrates using ribosome footprinting and evolutionary conservation.

28 July 2018

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Emerging evidence for functional peptides encoded by short open reading frames

28 July 2018

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Toddler: an embryonic signal that promotes cell movement via Apelin receptors

28 July 2018

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Ribosome profiling reveals pervasive and regulated stop codon readthrough in Drosophila melanogaster

28 July 2018

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Combining in silico prediction and ribosome profiling in a genome-wide search for novel putatively coding sORFs

28 July 2018

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Conserved regulation of cardiac calcium uptake by peptides encoded in small open reading frames

28 July 2018

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Ribosome profiling provides evidence that large noncoding RNAs do not encode proteins

28 July 2018

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Ribosome profiling reveals resemblance between long non-coding RNAs and 5' leaders of coding RNAs

28 July 2018

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Right hemothorax: An unusual presentation of a Barrett's ulcer perforation

28 July 2018

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Small open reading frames associated with morphogenesis are hidden in plant genomes

28 July 2018

1 reference

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GenomeRNAi: a database for cell-based and in vivo RNAi phenotypes, 2013 update.

28 July 2018

1 reference

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Peptidomic discovery of short open reading frame-encoded peptides in human cells.

28 July 2018

1 reference

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Genome-wide search for novel human uORFs and N-terminal protein extensions using ribosomal footprinting

28 July 2018

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The ribosome profiling strategy for monitoring translation in vivo by deep sequencing of ribosome-protected mRNA fragments

28 July 2018

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Hundreds of putatively functional small open reading frames in Drosophila

28 July 2018

1 reference

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Ribosome profiling of mouse embryonic stem cells reveals the complexity and dynamics of mammalian proteomes

28 July 2018

1 reference

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Putatively noncoding transcripts show extensive association with ribosomes

28 July 2018

1 reference

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Glucose-stimulated translation regulation of insulin by the 5' UTR-binding proteins.

28 July 2018

1 reference

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Small membrane proteins found by comparative genomics and ribosome binding site models.

28 July 2018

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Drosophila Pgc protein inhibits P-TEFb recruitment to chromatin in primordial germ cells

28 July 2018

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Small peptide regulators of actin-based cell morphogenesis encoded by a polycistronic mRNA.

28 July 2018

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A high-quality catalog of the Drosophila melanogaster proteome

28 July 2018

1 reference

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Peptides encoded by short ORFs control development and define a new eukaryotic gene family

28 July 2018

1 reference

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The host defense of Drosophila melanogaster

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359375

Functional genomics of genes with small open reading frames (sORFs) in S. cerevisiae

28 July 2018

1 reference

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SwePep, a database designed for endogenous peptides and mass spectrometry

28 July 2018

1 reference

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Regulation of translation via mRNA structure in prokaryotes and eukaryotes

28 July 2018

1 reference

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Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes

28 July 2018

1 reference

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Comparison of the oxidative phosphorylation (OXPHOS) nuclear genes in the genomes of Drosophila melanogaster, Drosophila pseudoobscura and Anopheles gambiae

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359375

Translational control by an upstream open reading frame in the HER-2/neu transcript

28 July 2018

1 reference

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28 July 2018

Non-Darwinian Evolution

1 reference

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Cell lines derived from late embryonic stages of Drosophila melanogaster

28 July 2018

1 reference

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Conformational parameters for amino acids in helical, beta-sheet, and random coil regions calculated from proteins

28 July 2018

1 reference

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The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression

28 July 2018

1 reference

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Mass spectrometric profiling of (neuro)-peptides in the worker honeybee, Apis mellifera

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359375

Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359375

GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359375

The 11-aminoacid long Tarsal-less peptides trigger a cell signal in Drosophila leg development.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359375

The abundance of short proteins in the mammalian proteome

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359375

BRICK1/HSPC300 functions with SCAR and the ARP2/3 complex to regulate epidermal cell shape in Arabidopsis

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359375

Genome-wide analysis of mRNA translation profiles in Saccharomyces cerevisiae

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359375

An integrated approach for finding overlooked genes in yeast.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359375

Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359375

Small open reading frames: beautiful needles in the haystack.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359375

Replication initiation proteins regulate a developmental checkpoint in Bacillus subtilis

27 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.7554%2FELIFE.03528

21 January 2018

Identifiers

DOI

10.7554/ELIFE.03528

1 reference

Dimensions Publication ID

6 August 2017

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1 reference

6 August 2017

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