Inferring neutral biodiversity parameters using environmental DNA data sets (Q31137996)

19 August 2017

Inferring neutral biodiversity parameters using environmental DNA data sets (English)

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19 August 2017

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3

Pierre Taberlet

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Eric Coissac

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4

object named as

Eric Coissac

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19 August 2017

5

Jérôme Chave

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19 August 2017

Guilhem Sommeria-Klein

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1

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19 August 2017

Lucie Zinger

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2

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19 August 2017

language of work or name

English

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publication date

20 October 2016

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19 August 2017

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19 August 2017

6

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19 August 2017

35644

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Creative Commons Attribution 4.0 International

19 August 2017

start time

20 October 2016

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April 2022 Public Data File from Crossref

copyright status

copyrighted

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describes a project that uses

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Neutral community model explains the bacterial community assembly in freshwater lakes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5071827

Tree diversity and species identity effects on soil fungi, protists and animals are context dependent

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5071827

Swarm: robust and fast clustering method for amplicon-based studies

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5071827

Can abundance of protists be inferred from sequence data: a case study of foraminifera

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5071827

Incorporating 16S gene copy number information improves estimates of microbial diversity and abundance

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5071827

The case for ecological neutral theory.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5071827

Two decades of describing the unseen majority of aquatic microbial diversity

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5071827

Meta-barcoding of 'dirt' DNA from soil reflects vertebrate biodiversity

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5071827

Removing noise from pyrosequenced amplicons

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5071827

Robust computational analysis of rRNA hypervariable tag datasets

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5071827

Combined niche and neutral effects in a microbial wastewater treatment community.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5071827

Conceptual synthesis in community ecology

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5071827

Regional invariance among microbial communities.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5071827

Relative roles of niche and neutral processes in structuring a soil microbial community

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5071827

An integrative framework for stochastic, size-structured community assembly

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5071827

Inferring the parameters of the neutral theory of biodiversity using phylogenetic information and implications for tropical forests.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5071827

Pyrosequencing enumerates and contrasts soil microbial diversity

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5071827

Microbial population structures in the deep marine biosphere

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5071827

A neutral sampling formula for multiple samples and an 'exact' test of neutrality

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5071827

Modeling taxa-abundance distributions in microbial communities using environmental sequence data

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5071827

Comment on "Neutral ecological theory reveals isolation and rapid speciation in a biodiversity hot spot".

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5071827

A quantitative model of error accumulation during PCR amplification

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5071827

Genomic studies of uncultivated archaea

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5071827

Biological identifications through DNA barcodes

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5071827

Prokaryotes: the unseen majority

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5071827

A general model for the origin of allometric scaling laws in biology

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5071827

The sampling theory of selectively neutral alleles

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5071827

Genetic diversity in Sargasso Sea bacterioplankton

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5071827

28 July 2018

1 reference

DNA from soil mirrors plant taxonomic and growth form diversity

21 January 2018

1 reference

Tracking earthworm communities from soil DNA.

21 January 2018

1 reference

Fungal biogeography. Global diversity and geography of soil fungi

21 January 2018

1 reference

Biogeographic patterns in below-ground diversity in New York City's Central Park are similar to those observed globally.

21 January 2018

1 reference

A dispersal-limited sampling theory for species and alleles.

21 January 2018

1 reference

Quantifying the roles of immigration and chance in shaping prokaryote community structure.

21 January 2018

1 reference

Neutral assembly of bacterial communities

21 January 2018

1 reference

Balance of neutral and deterministic components in the dynamics of activated sludge floc assembly.

21 January 2018

1 reference

Both species sorting and neutral processes drive assembly of bacterial communities in aquatic microcosms

21 January 2018

1 reference

Maximum likelihood estimation of neutral model parameters for multiple samples with different degrees of dispersal limitation

21 January 2018

1 reference

Illumina-based analysis of microbial community diversity

21 January 2018

1 reference

Characterizing and measuring bias in sequence data

21 January 2018

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Bioinformatic challenges for DNA metabarcoding of plants and animals

21 January 2018

1 reference

Effect of primer mismatch, annealing temperature and PCR cycle number on 16S rRNA gene-targetting bacterial community analysis.

21 January 2018

1 reference

Quantifying microbial communities with 454 pyrosequencing: does read abundance count?

21 January 2018

1 reference

Analyzing and minimizing PCR amplification bias in Illumina sequencing libraries

21 January 2018

1 reference

Parsing ecological signal from noise in next generation amplicon sequencing.

21 January 2018

1 reference

Quantification of eDNA shedding rates from invasive bighead carp Hypophthalmichthys nobilis and silver carp Hypophthalmichthys molitrix

21 January 2018

1 reference

Environmental conditions influence eDNA persistence in aquatic systems.

21 January 2018

1 reference

Neutral Community Theory: How Stochasticity and Dispersal-Limitation Can Explain Species Coexistence

21 January 2018

1 reference

Biodiversity soup: metabarcoding of arthropods for rapid biodiversity assessment and biomonitoring

21 January 2018

1 reference

A new sampling formula for neutral biodiversity

21 January 2018

1 reference

Pólya-like urns and the Ewens' sampling formula

21 January 2018

1 reference

Cycling of extracellular DNA in the soil environment

21 January 2018

1 reference

Reconciling neutral community models and environmental filtering: theory and an empirical test

21 January 2018

1 reference

The release rate of environmental DNA from juvenile and adult fish

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5071827

Sequencing our way towards understanding global eukaryotic biodiversity

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5071827

25 November 2018

Identifiers

DOI

10.1038/SREP35644

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Dimensions Publication ID

19 August 2017

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1 reference

19 August 2017

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