Structural and energetic determinants of the S1-site specificity in serine proteases (Q33548213)

28 July 2017

1 reference

title

Structural and energetic determinants of the S1-site specificity in serine proteases (English)

1 reference

28 July 2017

H Czapinska

1

1 reference

PubMed ID

10102985

28 July 2017

J Otlewski

series ordinal

2

1 reference

PubMed ID

10102985

28 July 2017

language of work or name

English

0 references

publication date

1 March 1999

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28 July 2017

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28 July 2017

260

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3

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28 July 2017

571-595

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Evolution of Proteolytic Enzymes

28 July 2017

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Refined atomic model of wheat serine carboxypeptidase II at 2.2-A resolution

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Unique fold and active site in cytomegalovirus protease

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Structure of human rhinovirus 3C protease reveals a trypsin-like polypeptide fold, RNA-binding site, and means for cleaving precursor polyprotein

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The high-resolution X-ray crystal structure of the complex formed between subtilisin Carlsberg and eglin c, an elastase inhibitor from the leech Hirudo medicinalis. Structural analysis, subtilisin structure and interface geometry

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Structural comparison of two serine proteinase-protein inhibitor complexes: eglin-c-subtilisin Carlsberg and CI-2-subtilisin Novo

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A protein-folding reaction under kinetic control

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Pro-sequence of subtilisin can guide the refolding of denatured subtilisin in an intermolecular process.

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Protein memory through altered folding mediated by intramolecular chaperones.

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Structural basis for broad specificity in alpha-lytic protease mutants

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Relocating a negative charge in the binding pocket of trypsin

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Random mutagenesis of the substrate-binding site of a serine protease can generate enzymes with increased activities and altered primary specificities

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A genetic selection elucidates structural determinants of arginine versus lysine specificity in trypsin

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Selection of Streptomyces griseus protease B mutants with desired alterations in primary specificity using a library screening strategy

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A glutamic acid specific serine protease utilizes a novel histidine triad in substrate binding

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Novel features of serine protease active sites and specificity pockets: sequence analysis and modelling studies of glutamate-specific endopeptidases and epidermolytic toxins.

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Conservation and variability in the structures of serine proteinases of the chymotrypsin family

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Human leukocyte and porcine pancreatic elastase: X-ray crystal structures, mechanism, substrate specificity, and mechanism-based inhibitors

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Three-dimensional, sequence order-independent structural comparison of a serine protease against the crystallographic database reveals active site similarities: potential implications to evolution and to protein folding

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Comparative modeling methods: application to the family of the mammalian serine proteases

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Free energy calculations on binding and catalysis by alpha-lytic protease: the role of substrate size in the P1 pocket

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Protein inhibitors of proteinases

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Natural protein proteinase inhibitors and their interaction with proteinases

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Inhibition of subtilisin BPN' by reaction site P1 mutants of Streptomyces subtilisin inhibitor

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Specificity of human cathepsin G.

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Structure of chymotrypsin-trifluoromethyl ketone inhibitor complexes: comparison of slowly and rapidly equilibrating inhibitors

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Crystallographic study of the binding of a trifluoroacetyl dipeptide anilide inhibitor with elastase

21 January 2018

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The refined 2.3 A crystal structure of human leukocyte elastase in a complex with a valine chloromethyl ketone inhibitor

21 January 2018

1 reference

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Electrostatic complementarity within the substrate-binding pocket of trypsin

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Substrate specificity of trypsin investigated by using a genetic selection

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The refined 2.2-A (0.22-nm) X-ray crystal structure of the ternary complex formed by bovine trypsinogen, valine-valine and the Arg15 analogue of bovine pancreatic trypsin inhibitor

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Three-dimensional structure of the complex between pancreatic secretory trypsin inhibitor (Kazal type) and trypsinogen at 1.8 Å resolution

21 January 2018

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Crystal structure of an engineered subtilisin inhibitor complexed with bovine trypsin

21 January 2018

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Selective alteration of substrate specificity by replacement of aspartic acid-189 with lysine in the binding pocket of trypsin.

21 January 2018

1 reference

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Crystallographic analysis of trypsin-G226A. A specificity pocket mutant of rat trypsin with altered binding and catalysis

21 January 2018

1 reference

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Exogenous acetate reconstitutes the enzymatic activity of trypsin Asp189Ser

21 January 2018

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The three-dimensional structure of recombinant leech-derived tryptase inhibitor in complex with trypsin. Implications for the structure of human mast cell tryptase and its inhibition

21 January 2018

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Effects of secondary interactions on the kinetics of peptide and peptide ester hydrolysis by tissue kallikrein and trypsin

21 January 2018

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Specificity determinants of rat tissue kallikrein probed by site-directed mutagenesis

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Determinants of the unusual cleavage specificity of lysyl-bradykinin-releasing kallikreins

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Structure of mouse 7S NGF: a complex of nerve growth factor with four binding proteins

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Rat submaxillary gland serine protease, tonin. Structure solution and refinement at 1.8 A resolution

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1 reference

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The refined 1.9-Å X-ray crystal structure of d-Phe-Pro-Arg chloromethylketone-inhibited human α-thrombin: Structure analysis, overall structure, electrostatic properties, detailed active-site geometry, and structure-function relationships

21 January 2018

1 reference

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Substitution of valine for glycine-558 in the congenital dysthrombin thrombin Quick II alters primary substrate specificity

21 January 2018

1 reference

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Enzyme flexibility, solvent and 'weak' interactions characterize thrombin-ligand interactions: implications for drug design

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1 reference

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Structure-based design of a potent chimeric thrombin inhibitor.

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1 reference

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Protein engineering thrombin for optimal specificity and potency of anticoagulant activity in vivo

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Glu-192----Gln substitution in thrombin mimics the catalytic switch induced by thrombomodulin

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The thrombin E192Q-BPTI complex reveals gross structural rearrangements: implications for the interaction with antithrombin and thrombomodulin

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1 reference

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The crystal structure of the complex of blood coagulation factor VIIa with soluble tissue factor

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1 reference

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Structure of human des(1-45) factor Xa at 2.2 A resolution

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1 reference

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X-ray structure of antistasin at 1.9 A resolution and its modelled complex with blood coagulation factor Xa

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The second Kunitz domain of human tissue factor pathway inhibitor: cloning, structure determination and interaction with factor Xa

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1 reference

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X-ray structure of active site-inhibited clotting factor Xa. Implications for drug design and substrate recognition

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1 reference

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X-ray structure of clotting factor IXa: active site and module structure related to Xase activity and hemophilia B

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Active-site mapping of bovine and human blood coagulation serine proteases using synthetic peptide 4-nitroanilide and thio ester substrates

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Structural mapping of the active site specificity determinants of human tissue-type plasminogen activator. Implications for the design of low molecular weight substrates and inhibitors

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Lysine 156 promotes the anomalous proenzyme activity of tPA: X-ray crystal structure of single-chain human tPA.

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21 January 2018

1 reference

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Structural basis of the activation and action of trypsin

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Tissue-type plasminogen activator: variants and crystal/solution structures demarcate structural determinants of function

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1 reference

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Crystal structure of phenylmethanesulfonyl fluoride-treated human chymase at 1.9 A

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1 reference

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Water molecules participate in proteinase-inhibitor interactions: crystal structures of Leu18, Ala18, and Gly18 variants of turkey ovomucoid inhibitor third domain complexed with Streptomyces griseus proteinase B.

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1 reference

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Mammalian membrane-bound adenylyl cyclases

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Converting trypsin to chymotrypsin: the role of surface loops

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Structural origins of substrate discrimination in trypsin and chymotrypsin

21 January 2018

1 reference

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Delocalizing trypsin specificity with metal activation

21 January 2018

1 reference

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Active site mapping of the serine proteases human leukocyte elastase, cathepsin G, porcine pancreatic elastase, rat mast cell proteases I and II. Bovine chymotrypsin A alpha, and Staphylococcus aureus protease V-8 using tripeptide thiobenzyl ester s

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The polymorphonuclear leukocyte

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Substrate and inhibitor studies on proteinase 3

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Structural basis for the broad substrate specificity of fiddler crab collagenolytic serine protease 1.

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Designing substrate specificity by protein engineering of electrostatic interactions

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1 reference

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Furilisin: a variant of subtilisin BPN' engineered for cleaving tribasic substrates.

21 January 2018

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Recruitment of substrate-specificity properties from one enzyme into a related one by protein engineering

21 January 2018

1 reference

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Refined structure of alpha-lytic protease at 1.7 A resolution. Analysis of hydrogen bonding and solvent structure

21 January 2018

1 reference

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Hydrogen bonding and biological specificity analysed by protein engineering

21 January 2018

1 reference

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Structural plasticity broadens the specificity of an engineered protease

21 January 2018

1 reference

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Characterization of the S1 binding site of the glutamic acid-specific protease from Streptomyces griseus

21 January 2018

1 reference

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Substrate preferences of glutamic-acid-specific endopeptidases assessed by synthetic peptide substrates based on intramolecular fluorescence quenching

21 January 2018

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Hepatitis A virus 3C proteinase substrate specificity

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The structure of the superantigen exfoliative toxin A suggests a novel regulation as a serine protease

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1 reference

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New enzyme lineages by subdomain shuffling

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1 reference

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LIGPLOT: a program to generate schematic diagrams of protein-ligand interactions

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1 reference

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On the size of the active site in proteases. I. Papain

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1 reference

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Crystal and molecular structures of the complex of alpha-chymotrypsin with its inhibitor turkey ovomucoid third domain at 1.8 A resolution

21 January 2018

1 reference

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Structure of HBP, a multifunctional protein with a serine proteinase fold

21 January 2018

1 reference

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Perturbing the polar environment of Asp102 in trypsin: consequences of replacing conserved Ser214

21 January 2018

1 reference

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Structure of human neutrophil elastase in complex with a peptide chloromethyl ketone inhibitor at 1.84-A resolution

21 January 2018

1 reference

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The molecular environment of the Na+ binding site of thrombin

21 January 2018

1 reference

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The structure of rat mast cell protease II at 1.9-A resolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1046%2FJ.1432-1327.1999.00160.X

Structure of the complex of Streptomyces griseus protease B and the third domain of the turkey ovomucoid inhibitor at 1.8-A resolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1046%2FJ.1432-1327.1999.00160.X

Refined crystal structure of Streptomyces griseus trypsin at 1.7 A resolution

21 January 2018

1 reference

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Improved methods for building protein models in electron density maps and the location of errors in these models

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Engineering cyclophilin into a proline-specific endopeptidase

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Substance P regulates the vasodilator activity of calcitonin gene-related peptide

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10.1046/J.1432-1327.1999.00160.X

21 January 2018

Identifiers

DOI

1 reference

28 July 2017

1 reference

PubMed ID

10102985