Extreme mutation bias and high AT content in Plasmodium falciparum (Q33558392)

28 July 2017

Extreme mutation bias and high AT content in Plasmodium falciparum (English)

1 reference

28 July 2017

Plasmodium falciparum

0 references

1 reference

Dominic P. Kwiatkowski

7

1 reference

28 July 2017

3

Thomas D Otto

0 references

Antoine Claessens

object named as

Antoine Claessens

2

0 references

Julian Rayner

object named as

Julian C Rayner

6

0 references

Rick M. Fairhurst

5

object named as

Rick M Fairhurst

1 reference

28 July 2017

4

Mihir Kekre

1 reference

28 July 2017

William L Hamilton

1

1 reference

PubMed ID

27994033

28 July 2017

language of work or name

English

0 references

publication date

19 December 2016

1 reference

28 July 2017

Nucleic Acids Research

1 reference

28 July 2017

45

1 reference

28 July 2017

1889-1901

1 reference

28 July 2017

4

1 reference

Creative Commons Attribution 4.0 International

28 July 2017

start time

19 December 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

1 reference

10 June 2022

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=pmc&rettype=xml&id=5389722

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21 June 2018

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The evolution of genomic GC content undergoes a rapid reversal within the genus Plasmodium

21 June 2018

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Genetic architecture of artemisinin-resistant Plasmodium falciparum

21 June 2018

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Generation of antigenic diversity in Plasmodium falciparum by structured rearrangement of Var genes during mitosis

21 June 2018

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Plasmodium falciparum field isolates from areas of repeated emergence of drug resistant malaria show no evidence of hypermutator phenotype

21 June 2018

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Genome sequencing of chimpanzee malaria parasites reveals possible pathways of adaptation to human hosts.

21 June 2018

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Independent emergence of artemisinin resistance mutations among Plasmodium falciparum in Southeast Asia

21 June 2018

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Spread of artemisinin resistance in Plasmodium falciparum malaria

21 June 2018

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A molecular marker of artemisinin-resistant Plasmodium falciparum malaria

21 June 2018

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Genome-wide mapping of DNA methylation in the human malaria parasite Plasmodium falciparum

21 June 2018

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Genome dynamics during experimental evolution

21 June 2018

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Malaria parasites utilize both homologous recombination and alternative end joining pathways to maintain genome integrity

21 June 2018

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Asparagine repeats in Plasmodium falciparum proteins: good for nothing?

21 June 2018

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Mutation rates, spectra, and genome-wide distribution of spontaneous mutations in mismatch repair deficient yeast

21 June 2018

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Asexual populations of the human malaria parasite, Plasmodium falciparum, use a two-step genomic strategy to acquire accurate, beneficial DNA amplifications

21 June 2018

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Multiple populations of artemisinin-resistant Plasmodium falciparum in Cambodia

21 June 2018

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The origin, evolution, and functional impact of short insertion-deletion variants identified in 179 human genomes

21 June 2018

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Mitotic evolution of Plasmodium falciparum shows a stable core genome but recombination in antigen families

21 June 2018

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Direct evidence for the adaptive role of copy number variation on antifolate susceptibility in Plasmodium falciparum.

21 June 2018

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Temporal expression and localization patterns of variant surface antigens in clinical Plasmodium falciparum isolates during erythrocyte schizogony

21 June 2018

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Rate and molecular spectrum of spontaneous mutations in the bacterium Escherichia coli as determined by whole-genome sequencing.

21 June 2018

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DELLY: structural variant discovery by integrated paired-end and split-read analysis

21 June 2018

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Genomic sequencing of Plasmodium falciparum malaria parasites from Senegal reveals the demographic history of the population

21 June 2018

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Analysis of Plasmodium falciparum diversity in natural infections by deep sequencing

21 June 2018

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A restricted subset of var genes mediates adherence of Plasmodium falciparum-infected erythrocytes to brain endothelial cells

21 June 2018

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Antigenic variation and the generation of diversity in malaria parasites

21 June 2018

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On the molecular mechanism of GC content variation among eubacterial genomes

21 June 2018

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An AT mutational bias in the tiny GC-rich endosymbiont genome of Hodgkinia

21 June 2018

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Malaria drug resistance is associated with defective DNA mismatch repair

21 June 2018

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Origin of the human malaria parasite Plasmodium falciparum in gorillas

21 June 2018

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Evidence that mutation is universally biased towards AT in bacteria

21 June 2018

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The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

21 June 2018

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Low-complexity regions in Plasmodium falciparum: missing links in the evolution of an extreme genome

21 June 2018

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The rate and molecular spectrum of spontaneous mutations in Arabidopsis thaliana

21 June 2018

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var gene transcription dynamics in Plasmodium falciparum patient isolates

21 June 2018

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Low Complexity Regions behave as tRNA sponges to help co-translational folding of plasmodial proteins

21 June 2018

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Origins and functional impact of copy number variation in the human genome

21 June 2018

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A genome-wide view of Caenorhabditis elegans base-substitution mutation processes.

21 June 2018

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LookSeq: A browser-based viewer for deep sequencing data

21 June 2018

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Gene copy number variation throughout the Plasmodium falciparum genome

21 June 2018

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The Sequence Alignment/Map format and SAMtools

21 June 2018

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The origins of apicomplexan sequence innovation.

21 June 2018

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Control of gene expression in Plasmodium falciparum - ten years on.

21 June 2018

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Whole-genome mutational biases in bacteria

21 June 2018

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Genomics and evolution of heritable bacterial symbionts

21 June 2018

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Adaptive copy number evolution in malaria parasites

21 June 2018

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Small deletion variants have stable breakpoints commonly associated with alu elements.

21 June 2018

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A genome-wide view of the spectrum of spontaneous mutations in yeast.

21 June 2018

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Plasmodium falciparum: food vacuole localization of nitric oxide-derived species in intraerythrocytic stages of the malaria parasite

21 June 2018

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Artemisinin-based combination treatment of falciparum malaria.

21 June 2018

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Genome sequence of Babesia bovis and comparative analysis of apicomplexan hemoprotozoa

21 June 2018

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Reduced selection leads to accelerated gene loss in Shigella

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5389722

Mutational and selective effects on copy-number variants in the human genome

21 June 2018

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A brief review of short tandem repeat mutation

21 June 2018

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Differential changes in Plasmodium falciparum var transcription during adaptation to culture

21 June 2018

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Antimalarial drugs: recent advances in molecular determinants of resistance and their clinical significance

21 June 2018

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Plasmodium falciparum variant surface antigen expression patterns during malaria

21 June 2018

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Recombination hotspots and population structure in Plasmodium falciparum

21 June 2018

1 reference

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The evolution of amino acid repeat arrays in Plasmodium and other organisms.

21 June 2018

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Redox and antioxidant systems of the malaria parasite Plasmodium falciparum

21 June 2018

1 reference

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Hyper-expansion of asparagines correlates with an abundance of proteins with prion-like domains in Plasmodium falciparum

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5389722

Encoded errors: mutations and rearrangements mediated by misalignment at repetitive DNA sequences

21 June 2018

1 reference

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Plasmodium falciparum associated with severe childhood malaria preferentially expresses PfEMP1 encoded by group A var genes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5389722

Defective DNA repair as a potential mechanism for the rapid development of drug resistance in Plasmodium falciparum

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5389722

Oxidative stress in malaria parasite-infected erythrocytes: host-parasite interactions

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5389722

Sub-grouping of Plasmodium falciparum 3D7 var genes based on sequence analysis of coding and non-coding regions

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5389722

Patterns of nucleotide substitution, insertion and deletion in the human genome inferred from pseudogenes

21 June 2018

1 reference

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Early origin and recent expansion of Plasmodium falciparum

21 June 2018

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Microsatellites: genomic distribution, putative functions and mutational mechanisms: a review

21 June 2018

1 reference

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Genome sequence of the human malaria parasite Plasmodium falciparum

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5389722

Low-complexity regions in Plasmodium falciparum proteins

21 June 2018

1 reference

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Biased amino acid composition in repeat regions of Plasmodium antigens.

21 June 2018

1 reference

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Patterns of nucleotide substitution in Drosophila and mammalian genomes

21 June 2018

1 reference

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Oxidized, deaminated cytosines are a source of C --> T transitions in vivo

21 June 2018

1 reference

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Variations in frequencies of drug resistance in Plasmodium falciparum

21 June 2018

1 reference

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Substitution-rate variation among sites and the estimation of transition bias

21 June 2018

1 reference

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Multiple significance tests: the Bonferroni method

21 June 2018

1 reference

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Erythrocyte stages of Plasmodium falciparum exhibit a high nitric oxide synthase (NOS) activity and release an NOS-inducing soluble factor

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5389722

Mitochondrial DNA sequences of primates: Tempo and mode of evolution

21 June 2018

1 reference

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Molecular evolution of chloroplast DNA sequences

21 June 2018

1 reference

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Spontaneous mutation in the Escherichia coli lacI gene

21 June 2018

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Cultivation of malarial parasites

21 June 2018

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A study of var gene transcription in vitro using universal var gene primers.

21 June 2018

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Detection of genetically divergent clone mates in apomictic dandelions

21 January 2018

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A genome-wide map of diversity in Plasmodium falciparum

21 January 2018

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Variation in the ratio of nucleotide substitution and indel rates across genomes in mammals and bacteria.

21 January 2018

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Analysis of the genome sequences of three Drosophila melanogaster spontaneous mutation accumulation lines

21 January 2018

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The excess of transitions among nucleotide substitutions: new methods of estimating transition bias underscore its significance.

21 January 2018

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Base composition bias might result from competition for metabolic resources.

21 January 2018

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Enhanced generation of A:T-->T:A transversions in a recA730 lexA51(Def) mutant of Escherichia coli.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKW1259

Recurrent gene amplification and soft selective sweeps during evolution of multidrug resistance in malaria parasites.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKW1259

Patterns of nucleotide substitution in pseudogenes and functional genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKW1259

Nitric oxide-induced deamination of cytosine and guanine in deoxynucleosides and oligonucleotides

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27994033

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKW1259

1 reference

28 July 2017

1 reference

28 July 2017

1 reference

PubMed ID

27994033