vConTACT: an iVirus tool to classify double-stranded DNA viruses that infect Archaea and Bacteria (Q33642282)

28 July 2017

title

vConTACT: an iVirus tool to classify double-stranded DNA viruses that infect Archaea and Bacteria (English)

1 reference

28 July 2017

1

Benjamin Bolduc

1 reference

28 July 2017

Ho Bin Jang

2

1 reference

28 July 2017

Guilhem Doulcier

3

1 reference

28 July 2017

Zhi-Qiang You

4

1 reference

28 July 2017

Simon Roux

5

1 reference

28 July 2017

Matthew B Sullivan

6

1 reference

28 July 2017

publication date

3 May 2017

1 reference

28 July 2017

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28 July 2017

volume

5

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28 July 2017

page(s)

e3243

1 reference

Creative Commons Attribution 4.0 International

28 July 2017

copyright license

start time

3 May 2017

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

Cytoscape

object named as

Cytoscape

2 references

9 June 2022

https://europepmc.org/search?query=(METHODS:'Cytoscape')

based on heuristic

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

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28 July 2018

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28 July 2018

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28 July 2018

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28 July 2018

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28 July 2018

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28 July 2018

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28 July 2018

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28 July 2018

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28 July 2018

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28 July 2018

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Ocean plankton. Patterns and ecological drivers of ocean viral communities

28 July 2018

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28 July 2018

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28 July 2018

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Genomic characteristics and environmental distributions of the uncultivated Far-T4 phages

28 July 2018

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Single-cell genomics-based analysis of virus-host interactions in marine surface bacterioplankton

28 July 2018

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Disease-specific alterations in the enteric virome in inflammatory bowel disease

28 July 2018

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Understanding the enormous diversity of bacteriophages: the tailed phages that infect the bacterial family Enterobacteriaceae

28 July 2018

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Ecology and evolution of viruses infecting uncultivated SUP05 bacteria as revealed by single-cell- and meta-genomics

28 July 2018

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Depth-stratified functional and taxonomic niche specialization in the 'core' and 'flexible' Pacific Ocean Virome

28 July 2018

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Viral tagging reveals discrete populations in Synechococcus viral genome sequence space.

28 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5419219

Four Escherichia coli O157:H7 phages: a new bacteriophage genus and taxonomic classification of T1-like phages

28 July 2018

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Metabolic reprogramming by viruses in the sunlit and dark ocean

28 July 2018

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Phylogenomic network and comparative genomics reveal a diverged member of the ΦKZ-related group, marine vibrio phage ΦJM-2012.

28 July 2018

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Three proposed new bacteriophage genera of staphylococcal phages: "3alikevirus", "77likevirus" and "Phietalikevirus".

28 July 2018

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Genomes of marine cyanopodoviruses reveal multiple origins of diversity.

28 July 2018

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Identifying functional modules in interaction networks through overlapping Markov clustering

28 July 2018

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Gegenees: fragmented alignment of multiple genomes for determining phylogenomic distances and genetic signatures unique for specified target groups

28 July 2018

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The iPlant Collaborative: Cyberinfrastructure for Plant Biology

28 July 2018

1 reference

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28 July 2018

1 reference

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28 July 2018

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28 July 2018

Phylogenomic networks

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Network analyses structure genetic diversity in independent genetic worlds

28 July 2018

1 reference

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Acidianus filamentous virus 1 coat proteins display a helical fold spanning the filamentous archaeal viruses lineage

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5419219

Classification of Myoviridae bacteriophages using protein sequence similarity

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5419219

Prevalence and evolution of core photosystem II genes in marine cyanobacterial viruses and their hosts

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5419219

International Committee on Taxonomy of Viruses and the 3,142 unassigned species

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5419219

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5419219

ACLAME: a CLAssification of Mobile genetic Elements

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5419219

Imbroglios of viral taxonomy: genetic exchange and failings of phenetic approaches

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5419219

The Phage Proteomic Tree: a genome-based taxonomy for phage

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5419219

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5419219

A reevaluation of the higher taxonomy of viruses based on RNA polymerases

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5419219

Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5419219

The Genome of Cronobacter sakazakii Bacteriophage vB_CsaP_GAP227 Suggests a New Genus within the Autographivirinae

28 July 2018

1 reference

https://api.crossref.org/works/10.7717%2FPEERJ.3243

Computing topological parameters of biological networks.

21 January 2018

1 reference

https://api.crossref.org/works/10.7717%2FPEERJ.3243

A review of long-branch attraction

21 January 2018

1 reference

https://api.crossref.org/works/10.7717%2FPEERJ.3243

The capsid of the T4 phage superfamily: the evolution, diversity, and structure of some of the most prevalent proteins in the biosphere.

21 January 2018

1 reference

https://api.crossref.org/works/10.7717%2FPEERJ.3243

Network-Thinking: Graphs to Analyze Microbial Complexity and Evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.7717%2FPEERJ.3243

A selective barrier to horizontal gene transfer in the T4-type bacteriophages that has preserved a core genome with the viral replication and structural genes

21 January 2018

1 reference

https://api.crossref.org/works/10.7717%2FPEERJ.3243

Community detection in graphs

21 January 2018

1 reference

https://api.crossref.org/works/10.7717%2FPEERJ.3243

Characterization and genome sequencing of phage Abp1, a new phiKMV-like virus infecting multidrug-resistant Acinetobacter baumannii

21 January 2018

1 reference

https://api.crossref.org/works/10.7717%2FPEERJ.3243

Reticulate representation of evolutionary and functional relationships between phage genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.7717%2FPEERJ.3243

Recombination and microdiversity in coastal marine cyanophages

21 January 2018

1 reference

https://api.crossref.org/works/10.7717%2FPEERJ.3243

Comparative genomics of marine cyanomyoviruses reveals the widespread occurrence of Synechococcus host genes localized to a hyperplastic region: implications for mechanisms of cyanophage evolution.

21 January 2018

1 reference

https://api.crossref.org/works/10.7717%2FPEERJ.3243

Evolutionary genomics of archaeal viruses: unique viral genomes in the third domain of life

21 January 2018

1 reference

https://api.crossref.org/works/10.7717%2FPEERJ.3243

A new proposed taxon for double-stranded DNA viruses, the order "Ligamenvirales"

21 January 2018

1 reference

https://api.crossref.org/works/10.7717%2FPEERJ.3243

Four newly isolated fuselloviruses from extreme geothermal environments reveal unusual morphologies and a possible interviral recombination mechanism

21 January 2018

1 reference

https://api.crossref.org/works/10.7717%2FPEERJ.3243

21 January 2018

Identifiers

DOI

10.7717/PEERJ.3243

1 reference

28 July 2017

1 reference

28 July 2017

1 reference