Rapid evolution of PARP genes suggests a broad role for ADP-ribosylation in host-virus conflicts (Q33685526)

28 July 2017

Rapid evolution of PARP genes suggests a broad role for ADP-ribosylation in host-virus conflicts (English)

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28 July 2017

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4

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28 July 2017

Matthew D Daugherty

1

1 reference

PubMed ID

24875882

28 July 2017

Janet M Young

series ordinal

2

1 reference

PubMed ID

24875882

28 July 2017

Julie A Kerns

series ordinal

3

1 reference

28 July 2017

29 May 2014

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28 July 2017

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28 July 2017

10

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28 July 2017

5

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28 July 2017

e1004403

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Creative Commons Attribution 4.0 International

28 July 2017

start time

29 May 2014

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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21 June 2018

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What pathogens have taught us about posttranslational modifications

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B cell-intrinsic and -extrinsic regulation of antibody responses by PARP14, an intracellular (ADP-ribosyl)transferase

21 June 2018

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A systematic analysis of the PARP protein family identifies new functions critical for cell physiology.

21 June 2018

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Inhibition of hepatitis B virus replication by the host zinc finger antiviral protein

21 June 2018

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Macrodomain-containing proteins: regulating new intracellular functions of mono(ADP-ribosyl)ation.

21 June 2018

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The recognition and removal of cellular poly(ADP-ribose) signals.

21 June 2018

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Expanding functions of intracellular resident mono-ADP-ribosylation in cell physiology

21 June 2018

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A family of macrodomain proteins reverses cellular mono-ADP-ribosylation

21 June 2018

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Recognition of mono-ADP-ribosylated ARTD10 substrates by ARTD8 macrodomains

21 June 2018

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Poly(ADP-ribose) polymerase 1 promotes transcriptional repression of integrated retroviruses

21 June 2018

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Rules of engagement: molecular insights from host-virus arms races

21 June 2018

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Evolution-guided identification of antiviral specificity determinants in the broadly acting interferon-induced innate immunity factor MxA.

21 June 2018

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New insights into the molecular and cellular functions of poly(ADP-ribose) and PARPs

21 June 2018

1 reference

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An ancient history of gene duplications, fusions and losses in the evolution of APOBEC3 mutators in mammals

21 June 2018

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New PARP gene with an anti-alphavirus function

21 June 2018

1 reference

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Poly(ADP-ribose) regulates post-transcriptional gene regulation in the cytoplasm.

21 June 2018

1 reference

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Convergent evolution of escape from hepaciviral antagonism in primates

21 June 2018

1 reference

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Disease tolerance as a defense strategy

21 June 2018

1 reference

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Interferon-stimulated genes and their antiviral effector functions

21 June 2018

1 reference

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Herpes simplex virus requires poly(ADP-ribose) polymerase activity for efficient replication and induces extracellular signal-related kinase-dependent phosphorylation and ICP0-dependent nuclear localization of tankyrase 1.

21 June 2018

1 reference

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A random effects branch-site model for detecting episodic diversifying selection.

21 June 2018

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Poly(ADP-ribose) regulates stress responses and microRNA activity in the cytoplasm.

21 June 2018

1 reference

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The ADP-ribose-1''-monophosphatase domains of severe acute respiratory syndrome coronavirus and human coronavirus 229E mediate resistance to antiviral interferon responses

21 June 2018

1 reference

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A diverse range of gene products are effectors of the type I interferon antiviral response

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4038475

The coxsackievirus B 3C protease cleaves MAVS and TRIF to attenuate host type I interferon and apoptotic signaling

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4038475

Epigenetic modulation of host: new insights into immune evasion by viruses

21 June 2018

1 reference

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Evolutionary history of the poly(ADP-ribose) polymerase gene family in eukaryotes

21 June 2018

1 reference

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New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0

21 June 2018

1 reference

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Regulation of Epstein-Barr virus OriP replication by poly(ADP-ribose) polymerase 1.

21 June 2018

1 reference

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Toward a unified nomenclature for mammalian ADP-ribosyltransferases.

21 June 2018

1 reference

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Cleavage of IPS-1 in cells infected with human rhinovirus.

21 June 2018

1 reference

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Ubiquitination, ubiquitin-like modifiers, and deubiquitination in viral infection

21 June 2018

1 reference

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Sim4cc: a cross-species spliced alignment program

21 June 2018

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The nsP3 macro domain is important for Sindbis virus replication in neurons and neurovirulence in mice

21 June 2018

1 reference

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Protein kinase R reveals an evolutionary model for defeating viral mimicry

21 June 2018

1 reference

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Vaults and the major vault protein: novel roles in signal pathway regulation and immunity

21 June 2018

1 reference

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The Jpred 3 secondary structure prediction server

21 June 2018

1 reference

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P bodies, stress granules, and viral life cycles

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4038475

Positive selection and increased antiviral activity associated with the PARP-containing isoform of human zinc-finger antiviral protein

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4038475

Discordant evolution of the adjacent antiretroviral genes TRIM22 and TRIM5 in mammals

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4038475

The diverse biological roles of mammalian PARPS, a small but powerful family of poly-ADP-ribose polymerases.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4038475

Clustal W and Clustal X version 2.0

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4038475

PAML 4: phylogenetic analysis by maximum likelihood

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4038475

Disruption of innate immunity due to mitochondrial targeting of a picornaviral protease precursor

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4038475

The zinc-finger antiviral protein recruits the RNA processing exosome to degrade the target mRNA

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4038475

Inhibition of filovirus replication by the zinc finger antiviral protein

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4038475

A family of killer toxins. Exploring the mechanism of ADP-ribosylating toxins.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4038475

Poly(ADP-ribose): novel functions for an old molecule

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4038475

BAL1 and BBAP are regulated by a gamma interferon-responsive bidirectional promoter and are overexpressed in diffuse large B-cell lymphomas with a prominent inflammatory infiltrate

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4038475

Inhibition of PKR by RNA and DNA viruses

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4038475

In silico characterization of the family of PARP-like poly(ADP-ribosyl)transferases (pARTs)

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4038475

Cardif is an adaptor protein in the RIG-I antiviral pathway and is targeted by hepatitis C virus

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4038475

Positive selection of primate TRIM5alpha identifies a critical species-specific retroviral restriction domain

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4038475

ProtTest: selection of best-fit models of protein evolution

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4038475

The zinc finger antiviral protein directly binds to specific viral mRNAs through the CCCH zinc finger motifs

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4038475

Accuracy and power of statistical methods for detecting adaptive evolution in protein coding sequences and for identifying positively selected sites

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4038475

HyPhy: hypothesis testing using phylogenies

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4038475

Poly(ADP-ribose) polymerase 1 binds to Kaposi's sarcoma-associated herpesvirus (KSHV) terminal repeat sequence and modulates KSHV replication in latency

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4038475

Expression of the zinc-finger antiviral protein inhibits alphavirus replication

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4038475

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4038475

Inhibition of retroviral RNA production by ZAP, a CCCH-type zinc finger protein

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4038475

BAL is a novel risk-related gene in diffuse large B-cell lymphomas that enhances cellular migration

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4038475

New functions of a long-known molecule. Emerging roles of NAD in cellular signaling

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4038475

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4038475

A dot-matrix program with dynamic threshold control suited for genomic DNA and protein sequence analysis.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4038475

Inhibition of vaccinia virus replication by nicotinamide: evidence for ADP-ribosylation of viral proteins

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4038475

New functions of a long-known molecule

21 June 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1004403

Macrodomain-containing proteins are new mono-ADP-ribosylhydrolases.

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1004403

K-Estimator: calculation of the number of nucleotide substitutions per site and the confidence intervals

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24875882

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PGEN.1004403

1 reference

28 July 2017

1 reference

28 July 2017

1 reference

PubMed ID

24875882