Translation efficiency is determined by both codon bias and folding energy (Q33734785)

29 July 2017

title

Translation efficiency is determined by both codon bias and folding energy (English)

1 reference

29 July 2017

1 reference

Tamir Tuller

1

0 references

Eytan Ruppin

series ordinal

4

object named as

Eytan Ruppin

1 reference

29 July 2017

Yedael Y Waldman

2

1 reference

29 July 2017

Martin Kupiec

series ordinal

3

1 reference

29 July 2017

language of work or name

English

0 references

publication date

2 February 2010

1 reference

Proceedings of the National Academy of Sciences of the United States of America

29 July 2017

published in

1 reference

29 July 2017

volume

107

1 reference

29 July 2017

issue

8

1 reference

29 July 2017

page(s)

3645-3650

1 reference

Design parameters to control synthetic gene expression in Escherichia coli

29 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2840511

Full dynamic range proteome analysis of S. cerevisiae by targeted proteomics

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2840511

Proteome-wide cellular protein concentrations of the human pathogen Leptospira interrogans

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2840511

Coding-sequence determinants of gene expression in Escherichia coli

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2840511

Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2840511

Virus attenuation by genome-scale changes in codon pair bias

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2840511

Determinants of protein abundance and translation efficiency in S. cerevisiae

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2840511

RegulonDB (version 6.0): gene regulation model of Escherichia coli K-12 beyond transcription, active (experimental) annotated promoters and Textpresso navigation.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2840511

How do synonymous mutations affect fitness?

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2840511

Absolute protein expression profiling estimates the relative contributions of transcriptional and translational regulation.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2840511

Single-cell proteomic analysis of S. cerevisiae reveals the architecture of biological noise

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2840511

DINAMelt web server for nucleic acid melting prediction

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2840511

Solving the riddle of codon usage preferences: a test for translational selection

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2840511

Codon bias and heterologous protein expression

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2840511

Global analysis of protein expression in yeast

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2840511

Widespread selection for local RNA secondary structure in coding regions of bacterial genes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2840511

Precision and functional specificity in mRNA decay

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2840511

tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2840511

Molecules as documents of evolutionary history

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2840511

Codon usage and tRNA content in unicellular and multicellular organisms

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2840511

The codon Adaptation Index--a measure of directional synonymous codon usage bias, and its potential applications

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2840511

Codon preferences in free-living microorganisms

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2840511

Human catechol-O-methyltransferase haplotypes modulate protein expression by altering mRNA secondary structure.

21 June 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0909910107

Codon pairs in the genome of Escherichia coli.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0909910107

A role for mRNA secondary structure in the control of translation initiation

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0909910107

Betulin is a potent anti-tumor agent that is enhanced by cholesterol

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0909910107

Comparative proteomic and transcriptomic profiling of the fission yeast Schizosaccharomyces pombe

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2840511

Differential translation efficiency of orthologous genes is involved in phenotypic divergence of yeast species

30 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20133581

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Correlation between the abundance of Escherichia coli transfer RNAs and the occurrence of the respective codons in its protein genes

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20133581

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.0909910107

1 reference

release_hcmxb7hyr5hpvktdveeb6po5eu

29 July 2017

0 references

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/hcmxb7hyr5hpvktdveeb6po5eu

mapped directly with Wikidata item

24 November 2022

based on heuristic

PMC publication ID

2840511

1 reference

29 July 2017

1 reference