Metatranscriptomic approach to analyze the functional human gut microbiota (Q33847635)

29 July 2017

Metatranscriptomic approach to analyze the functional human gut microbiota (English)

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29 July 2017

7

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29 July 2017

8

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29 July 2017

Juan José Abellan

4

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author name string

María José Gosalbes

1

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29 July 2017

Ana Durbán

2

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29 July 2017

Miguel Pignatelli

3

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29 July 2017

Nuria Jiménez-Hernández

5

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29 July 2017

Ana Elena Pérez-Cobas

6

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29 July 2017

language of work or name

English

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publication date

8 March 2011

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29 July 2017

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29 July 2017

6

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29 July 2017

e17447

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29 July 2017

3

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Creative Commons Attribution 4.0 International

29 July 2017

start time

8 March 2011

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April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

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Metatranscriptome analysis of the human fecal microbiota reveals subject-specific expression profiles, with genes encoding proteins involved in carbohydrate metabolism being dominantly expressed

5 July 2018

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Organismal, genetic, and transcriptional variation in the deeply sequenced gut microbiomes of identical twins

5 July 2018

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Development and quantitative analyses of a universal rRNA-subtraction protocol for microbial metatranscriptomics

5 July 2018

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A human gut microbial gene catalogue established by metagenomic sequencing

5 July 2018

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Next generation sequencing of microbial transcriptomes: challenges and opportunities.

5 July 2018

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Applications of new sequencing technologies for transcriptome analysis.

5 July 2018

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Comparative analysis of pyrosequencing and a phylogenetic microarray for exploring microbial community structures in the human distal intestine

5 July 2018

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Comparative metagenomic analysis of a microbial community residing at a depth of 4,000 meters at station ALOHA in the North Pacific subtropical gyre

5 July 2018

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A perspective: metatranscriptomics as a tool for the discovery of novel biocatalysts.

5 July 2018

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Metatranscriptomics reveals unique microbial small RNAs in the ocean's water column

5 July 2018

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Characterizing a model human gut microbiota composed of members of its two dominant bacterial phyla

5 July 2018

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5 July 2018

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Mixed-species genomic microarray analysis of fecal samples reveals differential transcriptional responses of bifidobacteria in breast- and formula-fed infants

5 July 2018

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Comparative day/night metatranscriptomic analysis of microbial communities in the North Pacific subtropical gyre

5 July 2018

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Prokaryotic genomes and diversity in surface ocean waters: interrogating the global ocean sampling metagenome

5 July 2018

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Human gut microbiota in obesity and after gastric bypass

5 July 2018

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A core gut microbiome in obese and lean twins

5 July 2018

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Microbes in gastrointestinal health and disease

5 July 2018

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The Ribosomal Database Project: improved alignments and new tools for rRNA analysis

5 July 2018

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High-throughput diversity and functionality analysis of the gastrointestinal tract microbiota.

5 July 2018

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Detection of large numbers of novel sequences in the metatranscriptomes of complex marine microbial communities

5 July 2018

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Comparative analysis of human gut microbiota by barcoded pyrosequencing

5 July 2018

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Metagenomic signatures of the Peru Margin subseafloor biosphere show a genetically distinct environment

5 July 2018

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Simultaneous assessment of soil microbial community structure and function through analysis of the meta-transcriptome

5 July 2018

1 reference

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Microbial community gene expression in ocean surface waters

5 July 2018

1 reference

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Soil eukaryotic functional diversity, a metatranscriptomic approach

5 July 2018

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Comparative metagenomics revealed commonly enriched gene sets in human gut microbiomes

5 July 2018

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Mucosa-associated bacterial diversity in relation to human terminal ileum and colonic biopsy samples

5 July 2018

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Diversity of the human gastrointestinal tract microbiota revisited.

5 July 2018

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The role of small RNAs in quorum sensing

5 July 2018

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Small noncoding RNAs controlling pathogenesis

5 July 2018

1 reference

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MEGAN analysis of metagenomic data

5 July 2018

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Metagenomic analysis of the human distal gut microbiome

5 July 2018

1 reference

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A microbial world within us

5 July 2018

1 reference

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Community genomics among stratified microbial assemblages in the ocean's interior

5 July 2018

1 reference

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Estimating the growth rate of slowly growing marine bacteria from RNA content

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3050895

Syntrophic Association by Cocultures of the Methanol- and CO(2)-H(2)-Utilizing Species Eubacterium limosum and Pectin-Fermenting Lachnospira multiparus During Growth in a Pectin Medium

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3050895

RNA viral community in human feces: prevalence of plant pathogenic viruses

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3050895

Comparison of bacterial diversity along the human intestinal tract by direct cloning and sequencing of 16S rRNA genes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3050895

Metagenomics: DNA sequencing of environmental samples.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3050895

Composition and structure of microbial communities from stromatolites of Hamelin Pool in Shark Bay, Western Australia

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3050895

Analysis of microbial gene transcripts in environmental samples

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3050895

5 July 2018

The metagenomics of soil

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3050895

Diversity of the human intestinal microbial flora

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3050895

Rfam: annotating non-coding RNAs in complete genomes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3050895

Environmental genome shotgun sequencing of the Sargasso Sea

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3050895

Metagenomic analyses of an uncultured viral community from human feces

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3050895

Molecular characterization of the microbial species that colonize human ileal and colonic mucosa by using 16S rDNA sequence analysis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3050895

Gut flora in health and disease

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3050895

Stealth regulation: biological circuits with small RNA switches

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3050895

Mucosa-associated bacteria in the human gastrointestinal tract are uniformly distributed along the colon and differ from the community recovered from feces

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3050895

BLAT—The BLAST-Like Alignment Tool

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3050895

Screening of intestinal microflora for effective probiotic bacteria

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3050895

Cloning the soil metagenome: a strategy for accessing the genetic and functional diversity of uncultured microorganisms

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3050895

Temperature gradient gel electrophoresis analysis of 16S rRNA from human fecal samples reveals stable and host-specific communities of active bacteria.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3050895

Basic local alignment search tool

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3050895

Development of multi-color FISH method for analysis of seven Bifidobacterium species in human feces

5 July 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0017447

Design and validation of 16S rRNA probes to enumerate members of the Clostridium leptum subgroup in human faecal microbiota.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0017447

Regulatory effects of bifidobacteria on the growth of other colonic bacteria.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0017447

A Mathematical Theory of Communication

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0017447

Shotgun metaproteomics of the human distal gut microbiota

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0017447

Prokaryotic transcriptomics: a new view on regulation, physiology and pathogenicity

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21408168

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PONE.0017447

1 reference

29 July 2017

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1 reference

29 July 2017

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