A posteriori quality control for the curation and reuse of public proteomics data (Q33888463)

29 July 2017

A posteriori quality control for the curation and reuse of public proteomics data (English)

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29 July 2017

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29 July 2017

Johannes Griss

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Laurent Gatto

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Laurent Gatto

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Lennart Martens

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Lennart Martens

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author name string

Joseph M Foster

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29 July 2017

Sven Degroeve

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29 July 2017

Matthieu Visser

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29 July 2017

Rui Wang

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29 July 2017

language of work or name

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2 May 2011

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29 July 2017

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11

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2182-2194

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11

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Overview of the HUPO Plasma Proteome Project: results from the pilot phase with 35 collaborating laboratories and multiple analytical groups, generating a core dataset of 3020 proteins and a publicly-available database

29 July 2017

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https://api.crossref.org/works/10.1002%2FPMIC.201000602

Decoding signalling networks by mass spectrometry-based proteomics

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201000602

Quantitative analysis of protein complex constituents and their phosphorylation states on a LTQ-Orbitrap instrument

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000602

Protein biomarker discovery and validation: the long and uncertain path to clinical utility

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201000602

Open source system for analyzing, validating, and storing protein identification data

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201000602

Integration with the human genome of peptide sequences obtained by high-throughput mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000602

PRIDE: the proteomics identifications database

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201000602

NCBI Peptidome: a new public repository for mass spectrometry peptide identifications

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201000602

Analyzing large-scale proteomics projects with latent semantic indexing

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201000602

Computational prediction of proteotypic peptides for quantitative proteomics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000602

MaRiMba: a software application for spectral library-based MRM transition list assembly

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000602

Building consensus spectral libraries for peptide identification in proteomics

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201000602

Repeatability and reproducibility in proteomic identifications by liquid chromatography-tandem mass spectrometry

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201000602

Performance metrics for liquid chromatography-tandem mass spectrometry systems in proteomics analyses

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201000602

Enhanced detection of low abundance human plasma proteins using a tandem IgY12-SuperMix immunoaffinity separation strategy.

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201000602

High dynamic range characterization of the trauma patient plasma proteome

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201000602

A HUPO test sample study reveals common problems in mass spectrometry-based proteomics

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201000602

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201000602

Quantitative profiling of proteins in complex mixtures using liquid chromatography and mass spectrometry.

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201000602

Identification and relative quantitation of protein mixtures by enzymatic digestion followed by capillary reversed-phase liquid chromatography-tandem mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000602

Targeted proteomic strategy for clinical biomarker discovery

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201000602

A guide to the Proteomics Identifications Database proteomics data repository

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201000602

Pressure-assisted tryptic digestion using a syringe

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201000602

Interferences and contaminants encountered in modern mass spectrometry

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201000602

Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201000602

Tandem Mass Tags: A Novel Quantification Strategy for Comparative Analysis of Complex Protein Mixtures by MS/MS

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000602

Quantifying the impact of chimera MS/MS spectra on peptide identification in large-scale proteomics studies.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000602

Inhibition of intrinsic proteolytic activities moderates preanalytical variability and instability of human plasma

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201000602

Analysis of the experimental detection of central nervous system-related genes in human brain and cerebrospinal fluid datasets

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201000602

21 January 2018

Identifiers

DOI

10.1002/PMIC.201000602

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29 July 2017

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